Plant FIBer expression Database

Potri.001G006951 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G006951.1 pacid=42792218 polypeptide=Potri.001G006951.1.p locus=Potri.001G006951 ID=Potri.001G006951.1.v4.1 annot-version=v4.1
ATGAAGACGAAGCCGGTTCTCTCGGGTGGTTCTTCTTTTTCTGGTCACTGTTCGTCCTCCATTTTTCTGTGGTTCTTGGTCTGTTCCTCCATTTTTTCAG
TTCTTCCTCTGTTTCTGTTTTCCCCGTTTTTTAGTCTCCCCTGCCCTTCGTGGCTTTTTCTTCTCCCCGGTTCTGGGTCTCCTCTTCTCTCAGTTTTCCC
CAGGTTTTTTCAGTCTCTCCGCCTGGCTTTTTCGGGTCCCCAGTTTTTCTTTTTTGGTTTCTCGTCCCCTGTCTCCTCCTTTTCTTTCCCCTGGGTTTTT
TTCCGCCTTTTCTCTTGTTTTTCTCAGTTCTCTCTTCCGATGGTTTGGAGTGTGCAGCTGGAGACGAATAATTAG
AA sequence
>Potri.001G006951.1 pacid=42792218 polypeptide=Potri.001G006951.1.p locus=Potri.001G006951 ID=Potri.001G006951.1.v4.1 annot-version=v4.1
MKTKPVLSGGSSFSGHCSSSIFLWFLVCSSIFSVLPLFLFSPFFSLPCPSWLFLLPGSGSPLLSVFPRFFQSLRLAFSGPQFFFFGFSSPVSSFSFPWVF
FRLFSCFSQFSLPMVWSVQLETNN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G006951
[exp]
0 1
AT4G35160 O-methyltransferase family pro... Potri.013G121300
[exp]
16.15 0.6887 OOMT2.16
AT5G66290 unknown protein Potri.005G116300
[exp]
25.80 0.6467
AT1G78230 Outer arm dynein light chain 1... Potri.005G164000
[exp]
39.11 0.6292
AT3G19970 alpha/beta-Hydrolases superfam... Potri.005G089000
[exp]
92.65 0.5969
AT4G01370 ATMPK4 MAP kinase 4 (.1) Potri.003G131800
[exp]
97.21 0.5699 MMK3.1
AT3G48700 ATCXE13 carboxyesterase 13 (.1) Potri.009G104400
[exp]
98.48 0.6119
AT1G24330 ARM repeat superfamily protein... Potri.008G177100
[exp]
140.82 0.6053
AT3G52420 ATOEP7 outer envelope membrane protei... Potri.005G208100
[exp]
142.88 0.5866 OM14.1
AT4G01840 KCO5, ATTPK5, A... Ca2+ activated outward rectify... Potri.014G113700
[exp]
164.88 0.5821
AT5G46230 Protein of unknown function, D... Potri.004G064700
[exp]
199.44 0.5622

Potri.001G006951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.