Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 193 / 3e-58 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 188 / 9e-57 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 171 / 2e-49 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 104 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 80 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G39240 79 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 79 / 3e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 78 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 77 / 1e-15 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218400 [exp] 622 / 0 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G196900 [exp] 454 / 2e-161 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 223 / 2e-70 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 194 / 3e-58 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 190 / 2e-57 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 175 / 1e-50 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 108 / 3e-26 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 106 / 2e-25 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 89 / 1e-19 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016214 [exp] 373 / 5e-129 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 365 / 1e-125 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 345 / 1e-118 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 325 / 6e-111 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 100 / 4e-23 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 100 / 5e-23 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 88 / 5e-19 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 87 / 7e-19 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 87 / 2e-18 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 85 / 8e-18 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.001G007000.1 pacid=42790524 polypeptide=Potri.001G007000.1.p locus=Potri.001G007000 ID=Potri.001G007000.1.v4.1 annot-version=v4.1 ATGGAAAGTACTTTGTTCACTGAGTTTATCCCGAGTTTGCCTCAAGAACTTGGTCTTGAGTGCATGACTCGGTTGCCTTACACGGCTCACAGAGTTGCAT CCCAAGTCTGCAAGCAATGGCGTGAATTACTGGAAAGCAAGGATTTTTATTACCATAGAAAGAAACTGGGGTACACCCATAAGGTTGCTTGTCTTGTTCA AGCTGCTCACAGGGCTGATGTTTCGCAAGGATCGAAACCAGGTAACTCGCCTAGTTTTGGGATCACTGTGTTTGATTCTGTGAGTCAGACATGGCAGAGG CTTGACCCGGTGCCCAAGTATCCAAACGGGTTGCCTTTGTTTTGTCAATTGGCAAGCTGTGAGGGGAAGCTCGTGGTCATGGGAGGGTGGGACCCAGTGA GTTATGAACAGGTGAGTCATGTTTTTGTGTATGACTTTACAACAAGGAAGTGGAGAGAAGGGAAGGAGATGCCATCAAAGAGGTCCTTTTTTGCTATTGG GGCATATTCGGGTCGGATTTATGTTGTGGGTGGGCATGATGAGAATAAGAACGCGTTGAAAACCGGGTGGGTTTATGACTTGAGCAAGGAGGAGTGGACC GAGTTGAATCAGATGAGTCAAGAGAGAGATGAGTGTGAGGGGGTGGTGATTGGGGATGAGTTTTGGGCGGTTAGTGGATATAGAACCGACAATCAAGGGG AATTTGAGGAAAGTGCAGAGGTCTACGAATTCAGGTCGGGTCAATGGAGGCGGGTCAAGGAGGCGTGGATTCCAGGGCGGTGCCCGAGATCTAGTGTTGG GGCAGGGAAGGATGGGAGATTGATGAGTTGGGCTGACTTGGACCCGGCGGTTCGGGTTGCAGTACGCGGGATCATGTTCGGTTTACGGGTCATGGTTTCC GGGTCGGATAGCCCAGGTGCACCCCAAGGGTTCTATATGGTGGAAATGAAAGATGGGCAAAATGGGCAATTGGAAAAGATCAATGTGCCTGAAGAGTTCT CTGGGTTTGTTCAATCTGGCTGCTGTGTGGAGATCTAA
AA sequence Show only first row Show all	>Potri.001G007000.1 pacid=42790524 polypeptide=Potri.001G007000.1.p locus=Potri.001G007000 ID=Potri.001G007000.1.v4.1 annot-version=v4.1 MESTLFTEFIPSLPQELGLECMTRLPYTAHRVASQVCKQWRELLESKDFYYHRKKLGYTHKVACLVQAAHRADVSQGSKPGNSPSFGITVFDSVSQTWQR LDPVPKYPNGLPLFCQLASCEGKLVVMGGWDPVSYEQVSHVFVYDFTTRKWREGKEMPSKRSFFAIGAYSGRIYVVGGHDENKNALKTGWVYDLSKEEWT ELNQMSQERDECEGVVIGDEFWAVSGYRTDNQGEFEESAEVYEFRSGQWRRVKEAWIPGRCPRSSVGAGKDGRLMSWADLDPAVRVAVRGIMFGLRVMVS GSDSPGAPQGFYMVEMKDGQNGQLEKINVPEEFSGFVQSGCCVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G007000 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.015G018800 [exp]	2.23	0.7899
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	2.82	0.7886
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.004G074000 [exp]	4.00	0.7851	BETA-OHASE.2
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Potri.006G027700 [exp]	4.47	0.7735
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	6.70	0.7438
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	7.93	0.7504
AT3G16990			Haem oxygenase-like, multi-hel...		Potri.008G106600 [exp]	8.00	0.7202	Pt-PM36.1
AT1G27300			unknown protein		Potri.003G170700 [exp]	8.48	0.7499
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.001G092100 [exp]	10.24	0.7862
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.010G224800 [exp]	11.48	0.7401

Compare expression of checked genes

Potri.001G007000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.