Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20142 77 / 2e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T044600 [exp] 178 / 6e-49 AT4G27220 192 / 7e-51 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145558 [exp] 169 / 8e-46 AT4G27220 188 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) Potri.018G023600 [exp] 149 / 8e-41 AT2G20142 86 / 7e-19 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.006G267201 [exp] 125 / 1e-31 AT2G20142 61 / 5e-10 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.018G145554 [exp] 78 / 8e-17 AT4G15020 55 / 4e-09 hAT transposon superfamily (.1.2) Potri.015G125950 [exp] 51 / 1e-06 AT3G58480 91 / 3e-19 calmodulin-binding family protein (.1) Potri.006G258250 [exp] 45 / 5e-06 ND / Potri.015G048800 [exp] 44 / 0.0002 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008904 [exp] 66 / 2e-11 ND 38 / 0.007 Lus10000681 [exp] 43 / 0.0003 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10021635 [exp] 42 / 0.0005 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G007501.4 pacid=42792837 polypeptide=Potri.001G007501.4.p locus=Potri.001G007501 ID=Potri.001G007501.4.v4.1 annot-version=v4.1 ATGGAAATAGAAGAGGAAGAAGTGAAATGGGAGGCAATGGAACCAGAGAAAGATGAACCTGTTCTGACGCTTGGACTCCGTCGTCGACGTGCACCTGAGC AATCCCTCCATTCCCTCCTTCCATCATCAATATCATTACTTGCTGAGAGCTTGTCTTATATAAATCTGGTGAGCTTGAAGTTCTTCCAGAAACCTGCAGT GGATCGTTCTCCTATCAAGCACATGTCAGGGGCGAGTCAGAAAATAAAATTAAAGAGAGCCAAGCGCTTGCCCCCGCTTATGCGGGCCTTTGCCAGCCCC CGCCACTGGATGCAGTTGTCTGATATAGGTCTGTCGAACTTGGAGATTCTTCCAGAAATCGTTGGGTCTTTCTTCTATCAAGCACATGATAAGATTCTCG ACGGTATTACTGCATTTTTTTCCGATCTCTTTCACTTGAAGTCACTTACCTTGAGCGATAATGATGTGAGCCGGCTGCAACCAGTCTTAGCTTCGAGGAA TAACCAGCCTATTCCAGAATTTCTAATGGAGAAGTTGCCTGAGTTAGCTTCGGGGAATAACCAGACTATTCCAGAATTTCTAGCGGAGAAGTTACCTGAG TTACGCTCGTGGAATGACCACTCTCTTCAAGAATTAATAGCAAATACGATTTTAATGGAGAAGTTACCTTACTTAGCTTTGCGGAACACGCAGCGGCCTC ATCCAGAGTTACAAGCAAATGATAATCGTCTTGAAAATCTTGCTGCATCTGTCTTCAGCCAAGACGACTCGATGAATGATAATGATGTGAACCAGCATGC AATCTATGTAGAGGCAGAACAGCTGCTGGATGCTGGAGAAAGTTCACGTCCTAGAGAAATATCAGGATGGACTTTGCTGATGACAAACTTAATCCTAGAG ATTGCATCTGCGGTTTTTGACCAGATGGGTTATGCACAAATTGGCATGGTGTTGGCATTTGTAGCTTTGCTTCTTGCTGCCGTTGATCTCATTCACATGG CTCGAAAGGAAAGAATTAAACGGGCGGCCGGCATGAGCCCATTGCCACTTTTTCATCCCCGATCAACTTATACTTCCGCAACTAGAAAGCCTGTTGGCAC TATTGTTGAGTATTTTGGATTGGCTGGTGCTGTCTGGCAATGTGTTTATTCGACTGTGGAGTATACGTATACTCGTCAGAAGAAAGATAATCCAATTAAG ATATCTCTTCTACCTTTCATTTTCTTATTATGCGTGGTGATTTCCAAATTATTAGTCGACAAGAGTTGCATTGACAAGAGTTCTTAG
AA sequence Show only first row Show all	>Potri.001G007501.4 pacid=42792837 polypeptide=Potri.001G007501.4.p locus=Potri.001G007501 ID=Potri.001G007501.4.v4.1 annot-version=v4.1 MEIEEEEVKWEAMEPEKDEPVLTLGLRRRRAPEQSLHSLLPSSISLLAESLSYINLVSLKFFQKPAVDRSPIKHMSGASQKIKLKRAKRLPPLMRAFASP RHWMQLSDIGLSNLEILPEIVGSFFYQAHDKILDGITAFFSDLFHLKSLTLSDNDVSRLQPVLASRNNQPIPEFLMEKLPELASGNNQTIPEFLAEKLPE LRSWNDHSLQELIANTILMEKLPYLALRNTQRPHPELQANDNRLENLAASVFSQDDSMNDNDVNQHAIYVEAEQLLDAGESSRPREISGWTLLMTNLILE IASAVFDQMGYAQIGMVLAFVALLLAAVDLIHMARKERIKRAAGMSPLPLFHPRSTYTSATRKPVGTIVEYFGLAGAVWQCVYSTVEYTYTRQKKDNPIK ISLLPFIFLLCVVISKLLVDKSCIDKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.001G007501 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G012000 [exp]	1.41	0.9044
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	3.46	0.9006
					Potri.017G003689 [exp]	4.47	0.8913
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	4.89	0.8999
					Potri.007G038800 [exp]	4.89	0.8586
AT1G69550			disease resistance protein (TI...		Potri.005G030700 [exp]	5.91	0.8904
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	6.92	0.8357
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	6.92	0.8817
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Potri.014G115600 [exp]	7.87	0.7983
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112700 [exp]	9.32	0.8002

Compare expression of checked genes

Potri.001G007501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.