Plant FIBer expression Database

Potri.001G007700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17230 444 / 3e-155 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G217950
[exp]
700 / 0 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3)
Potri.003G218000
[exp]
576 / 0 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3)
Potri.005G205800
[exp]
446 / 3e-156 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Potri.002G056800
[exp]
439 / 2e-153 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Potri.017G138900
[exp]
439 / 3e-153 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Potri.004G081466
[exp]
219 / 1e-70 AT5G17230 260 / 9e-87 PHYTOENE SYNTHASE (.1.2.3)
Potri.004G081433
[exp]
71 / 3e-14 AT5G17230 144 / 2e-41 PHYTOENE SYNTHASE (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013753
[exp]
506 / 3e-180 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3)
Lus10039186
[exp]
503 / 4e-179 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3)
Lus10001416
[exp]
429 / 7e-150 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Lus10001050
[exp]
424 / 7e-148 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3)
Lus10020729
[exp]
407 / 1e-141 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3)
Lus10029809
[exp]
397 / 8e-136 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3)
Lus10014576
[exp]
77 / 1e-17 AT5G17230 69 / 1e-15 PHYTOENE SYNTHASE (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0613 Terp_synthase PF00494 SQS_PSY Squalene/phytoene synthase
Representative CDS sequence
>Potri.001G007700.1 pacid=42787817 polypeptide=Potri.001G007700.1.p locus=Potri.001G007700 ID=Potri.001G007700.1.v4.1 annot-version=v4.1
ATGTGTTCTACATTTTCACTTTCGGCTAAGCCTTGCACTGGGGCAGATAATGGCAAGTTCTTGCACTCAAAATCCTTGGTTACAAGAGCAAGAGCTGAAG
TGATCGCAGCTCCTAAGAGATCAAGCCAACGTGCTTTTCCTCGGCTATTAAAACATGGAATTCCTCATACTGATCTTCAAGTACATGAAATTGTTGAGAG
GCAGTCTCAGGCTAACAGCTTAAGCAAGCAAGATATCTGTAGAAAGCCGGAGTTCCATCCAGCGTTTCTTGAAGAAGCCTATGAAAGGTGCAGAAACATT
TGCGCCGAATATGCCAAGACTTTCTATCTAGGAACTCGGCTGATGACAGAGGAGCGACAGAAAGCCACATGGGCAATTTATGTATGGTGCAGGAGGACAG
ATGAGCTGGTCGATGGACCTAATGCAGTGCTCATGAGCACTGCTGTTCTTGATAGGTGGGAAGAGAGGCTGCAAGACATCTTTGATGGACGCCCCTATGA
CATGCTCGATGCTGCACTTACTGATACAATTTCCAAGTTCCCTTTAGACATTAAGCCTTTTAGGGACATGATTGAAGGTATGAGAATGGATACGAGAAAA
TTCCGTTACGATAATTTTCAAGAGCTCTATCTTTATTGCTATTACGTTGCGGGCACAGTCGGCCTAATGAGCGTTCCAGTGATGGGAATTGCAGCAGAAT
CTGAAGCTTCTGCTCAAAGTATTTATAATGCGGCACTGTACTTGGGTATTGGAAACCAGCTTACAAACATTCTTAGAGATGTGGGAGAGGATGCTTTGAG
AGGGAGAGTTTATCTACCACAAGATGAGCTTGCACAGTTTGGGCTATGCGACCAAGATGTTTTCGCAAGAAAAGTCACTGATGGATGGAGAGAGTTCATG
AAGGAGCAGATAATAAGGGCAAGATTCTATTTCAACCTTGCAGAAGAAGGGGCTTCAAAGCTTGAAAAGGCTAGCCGGTGGCCAGTATGGTCATCCCTAC
TAGTATACCAAAAAATCTTGGATGCAATTGAGGATAATGATTATGATAACTTCACAAAACGAGCTTATGTTGGAAGAACAAAGAAACTTCTCACATTGCC
CCTGGCATACACAAAAGCTCAATCAATGTCTCGCTTGATCCTTCAGTAA
AA sequence
>Potri.001G007700.1 pacid=42787817 polypeptide=Potri.001G007700.1.p locus=Potri.001G007700 ID=Potri.001G007700.1.v4.1 annot-version=v4.1
MCSTFSLSAKPCTGADNGKFLHSKSLVTRARAEVIAAPKRSSQRAFPRLLKHGIPHTDLQVHEIVERQSQANSLSKQDICRKPEFHPAFLEEAYERCRNI
CAEYAKTFYLGTRLMTEERQKATWAIYVWCRRTDELVDGPNAVLMSTAVLDRWEERLQDIFDGRPYDMLDAALTDTISKFPLDIKPFRDMIEGMRMDTRK
FRYDNFQELYLYCYYVAGTVGLMSVPVMGIAAESEASAQSIYNAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDQDVFARKVTDGWREFM
KEQIIRARFYFNLAEEGASKLEKASRWPVWSSLLVYQKILDAIEDNDYDNFTKRAYVGRTKKLLTLPLAYTKAQSMSRLILQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700
[exp]
0 1
AT4G38470 STY46 serine/threonine/tyrosine kina... Potri.002G015400
[exp]
2.00 0.8337
Potri.010G173050
[exp]
2.23 0.8280
AT4G24480 Protein kinase superfamily pro... Potri.005G153100
[exp]
2.82 0.8133
AT3G10480 NAC ANAC050 NAC domain containing protein ... Potri.006G028900
[exp]
6.63 0.8475
AT4G22030 F-box family protein with a do... Potri.011G007000
[exp]
10.63 0.7479
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.018G133801
[exp]
12.28 0.7357
AT3G13610 2-oxoglutarate (2OG) and Fe(II... Potri.001G006750
[exp]
20.92 0.8379
AT4G35270 NLP2 Plant regulator RWP-RK family ... Potri.009G166666
[exp]
38.79 0.8136
Potri.014G151101
[exp]
48.21 0.7615
AT5G05130 DNA/RNA helicase protein (.1) Potri.016G033600
[exp]
55.09 0.7907 CHR946

Potri.001G007700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.