Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PP2.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42500 629 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 628 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT1G10430 528 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 528 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 527 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT4G26720 436 / 5e-155 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 431 / 5e-153 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 372 / 8e-130 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 370 / 3e-129 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 295 / 1e-99 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217900 [exp] 655 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 611 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 610 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.015G068300 [exp] 540 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 540 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 533 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 531 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.011G092200 [exp] 428 / 6e-152 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 427 / 1e-151 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039185 [exp] 645 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 640 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 632 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 611 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10042160 [exp] 541 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 533 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 527 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 527 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 525 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 485 / 1e-168 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.001G007800.1 pacid=42790153 polypeptide=Potri.001G007800.1.p locus=Potri.001G007800 ID=Potri.001G007800.1.v4.1 annot-version=v4.1 ATGAGCTTGGATTCGGTGGCTACAAACGCACATGGAAACCTTGATGAGGAAATTAGTCAGCTCATGCAGTGCAAGCCCTTATCAGAACAAGAGGTAAGGG CATTATGCGAGAAAGCTAAGGAGATTTTGATGGATGAAAGCAATGTTCAGCCTGTTAAAAGCCCTGTTACAATCTGTGGTGATATCCATGGTCAATTTCA TGATCTAGCTGAGCTTTTTCGCATTGGCGGGAAGTGTCCAGATACAAATTACTTGTTCATGGGAGATTATGTTGACCGTGGCTATTATTCAGTAGAAACC GTAACACTCCTGGTTGCCTTGAAAGTGCGTTATCCTCAACGGATTACTATTCTAAGGGGAAATCATGAAAGTCGTCAGATTACTCAAGTTTATGGTTTCT ATGATGAATGCCTGCGGAAGTATGGCAATGCTAATGTTTGGAAGATCTTTACAGATCTGTTTGATTATTTTCCACTGACAGCATTGGTTGAGTCGGAAAT ATTTTGCCTCCATGGTGGATTATCACCCTCCATTGAAACCCTTGATAACATTCGTAATTTTGATCGTGTTCAAGAAGTTCCCCATGAGGGTCCCATGTGT GATCTTTTGTGGTCTGACCCTGATGATCGCTGTGGTTGGGGCATCTCACCTAGGGGTGCTGGATATACCTTTGGTCAAGACATATCTGAGCAATTTAACC ATACAAACAACTTAAAGCTGATTGCTAGAGCTCACCAGCTGGTTATGGAAGGATACAACTGGGGCCATGAACAAAAGGTGGTTACTATCTTTAGTGCACC CAACTATTGCTACCGCTGTGGTAACATGGCTTCTATTTTGGAAGTTGATGACTGCAAGGGTCACACATTCATTCAGTTTGAGCCTGCTCCAAGGAGGGGT GAGCCAGATGTGACCCGGAGAACACCAGATTATTTCCTATGA
AA sequence Show only first row Show all	>Potri.001G007800.1 pacid=42790153 polypeptide=Potri.001G007800.1.p locus=Potri.001G007800 ID=Potri.001G007800.1.v4.1 annot-version=v4.1 MSLDSVATNAHGNLDEEISQLMQCKPLSEQEVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVET VTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMC DLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRG EPDVTRRTPDYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	0	1	PP2.4
AT3G48860			unknown protein		Potri.001G065800 [exp]	1.41	0.9436
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	1.73	0.9471
AT1G65270			unknown protein		Potri.019G055100 [exp]	4.47	0.9305
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	6.00	0.9419
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	6.32	0.9259
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.012G073300 [exp]	9.16	0.9211	Pt-VFPP2.1
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	9.89	0.9188
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	14.00	0.9260
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	14.14	0.9333
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	18.00	0.9254

Compare expression of checked genes

Potri.001G007800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.