Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42520 807 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 786 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 779 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT5G63120 352 / 2e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 338 / 3e-109 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 338 / 9e-108 DEAD box RNA helicase family protein (.1.2) AT3G01540 336 / 3e-107 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT2G33730 317 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 318 / 3e-96 DEAD box RNA helicase family protein (.1) AT2G47330 306 / 2e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217800 [exp] 956 / 0 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 778 / 0 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G061900 [exp] 755 / 0 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 335 / 2e-108 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 338 / 3e-108 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.013G158000 [exp] 329 / 4e-105 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G084600 [exp] 330 / 7e-105 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 334 / 9e-105 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.019G130900 [exp] 323 / 6e-103 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016207 [exp] 765 / 0 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 757 / 0 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 756 / 0 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 705 / 0 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029337 [exp] 661 / 0 AT2G42520 728 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000848 [exp] 624 / 0 AT2G42520 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 612 / 0 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001074 [exp] 542 / 0 AT3G58570 533 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015978 [exp] 514 / 6e-180 AT3G58570 535 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 333 / 2e-107 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G007900.5 pacid=42788397 polypeptide=Potri.001G007900.5.p locus=Potri.001G007900 ID=Potri.001G007900.5.v4.1 annot-version=v4.1 ATGAATAAGAAGAATTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAGAACATAAATGCTGGTTCTTCTGCTAACACTGGAAGTGTAGGTACTACTC CTGCAGCTGCCCCTTCCCGATCCACATACGTCCCTCCTCATCTCCGTAACCGTGCACCATCCTCAGACCCACCAGCTGCTGCTCATAGTGGGCCTGTGTC GAGTAATGATCATTCTGGGTATGGTGGTGGATCGCGCTCAGGTGTTCCAAGAAATGATTTCCGTGGTGGGTATGGTGGTAGCGGTGGGAGATCTGGTGGG TGGGGAAACAGAGGTGGCTGGGATCGTGGGAGAGAGCGGGAAGTAAATCCTTTTGGAGATGATGACGAAACAGAGCAGCCATTTAGTGAGCAAGAGAATA CTGGCATTAATTTTGATGCGTATGAAGATATTCCAGTTGAGACAAGTGGGGAGAATGTGCCACCAGCTGTAAATACCTTTGCGGAGATTGATTTGGGTGA GGCGTTGAATCTGAACATCCGCAGGTGCAAGTATGTGAAGCCCACGCCGGTGCAGCGGCATGCCATTCCAATCTCTCTTACAGGCCGGGACTTGATGGCC TGTGCCCAGACTGGTTCTGGGAAAACTGCTGCTTTCTGTTTCCCGATTATTAGTGGAATTATGAAAATGCAAGATCAGAGTGCACAAAGGCCACTTCGTG GAGCACGAACTGTGTACCCGCTAGCTCTTATTCTCTCTCCAACCAGAGAGCTTTCAATGCAGATACATGAGGAAGCTAAGAAATTCTCATATCAAACTGG TGTTAAAGTGGTTGTTGCTTATGGAGGAGCACCAATTCACCAACAGCTGCGAGAACTGGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGAAGATTG GTGGATTTGTTGGAGAGGGCTAGGGTTTCATTGCAGATGATCAAGTATTTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAA TAAGAAAAATTGTGGAACAAATGGACATGCCTCCACCTGGTTCAAGACAGACAATGCTGTTCAGTGCTACCTTTCCAAAAGAGATACAGAGACTAGCTTC TGACTTTTTGGCAAGTTATGTCTTTTTGGCTGTTGGACGAGTGGGCTCAAGTACAGATTTGATTGCCCAAAGAGTTGAATTTGTTCAGGAGTCTGACAAA AGAAGTCACCTCATGGACCTCCTTTATGCACAGCGGGCGAATGGTGTTCAGGGCAAGCAAGATTTGACATTAGTATTTGTGGAGACTAAGAAGGGTGCTG ATTCACTTGAGCATTGGCTATGCATTAATAATTTCCCTGCTACTAGCATCCATGGTGATAGATCACAACAGGAAAGAGAACAGGCATTGCGCTCATTTAA ATCTGGCAACACTCCAATTTTGGTAGCAACTGATGTTGCAGCACGTGGTCTTGATATTCCTCGTGTTGCACATGTGGTTAACTTTGATCTCCCAAACGAT ATTGATGATTATGTCCATCGTATCGGACGAACGGGACGAGCTGGAAAATCTGGTCTGGCAACTGCCTTCTTCAATGAGGGCAATGCATCAATGGCAAGGC CACTATCTGAACTAATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCTCGTTATGCAGCTCGTGCTTCCTTTGGAGGGAAGAACCGTCGTTCTGG GGGAGGTCGGTTTGGTGGCCGTGACTTTCGGAGGGATTCCTCTTCCAGTAGGGGCAATTCAGATTATTATGGTGGAGGAAGCAGTGGTGGATATGGAGGG GCTTCAGGCGGGTATGGTGGTGGAGGCTACGGTTCTGGGGTGACCAGTGCATGGGATTAA
AA sequence Show only first row Show all	>Potri.001G007900.5 pacid=42788397 polypeptide=Potri.001G007900.5.p locus=Potri.001G007900 ID=Potri.001G007900.5.v4.1 annot-version=v4.1 MNKKNSWADLAANSAAENINAGSSANTGSVGTTPAAAPSRSTYVPPHLRNRAPSSDPPAAAHSGPVSSNDHSGYGGGSRSGVPRNDFRGGYGGSGGRSGG WGNRGGWDRGREREVNPFGDDDETEQPFSEQENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMA CAQTGSGKTAAFCFPIISGIMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRELERGVDILVATPGRL VDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEFVQESDK RSHLMDLLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPND IDDYVHRIGRTGRAGKSGLATAFFNEGNASMARPLSELMQEANQEVPAWLSRYAARASFGGKNRRSGGGRFGGRDFRRDSSSSRGNSDYYGGGSSGGYGG ASGGYGGGGYGSGVTSAWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	0	1
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	5.19	0.6740
AT5G28850			Calcium-binding EF-hand family...		Potri.019G019500 [exp]	6.00	0.6731
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.010G248300 [exp]	7.81	0.6827	EEL.2
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	8.48	0.6813
AT4G39820			Tetratricopeptide repeat (TPR)...		Potri.005G079300 [exp]	14.49	0.6498
AT5G41670			6-phosphogluconate dehydrogena...		Potri.001G095800 [exp]	16.70	0.6358
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	33.16	0.6335
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	35.94	0.5531
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Potri.002G225800 [exp]	36.33	0.6527
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	51.38	0.5776

Compare expression of checked genes

Potri.001G007900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.