Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55270 731 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 122 / 9e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 122 / 2e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 106 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 105 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 100 / 3e-23 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 99 / 7e-23 SKIP4 SKP1 interacting partner 4 (.1) AT1G27420 98 / 2e-22 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 97 / 1e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 96 / 3e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G217700 [exp] 847 / 0 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 150 / 3e-40 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 147 / 7e-40 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 138 / 5e-36 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 117 / 2e-29 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.010G059200 [exp] 109 / 3e-26 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 105 / 5e-25 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 105 / 6e-25 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.018G007100 [exp] 105 / 9e-25 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001071 [exp] 659 / 0 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 635 / 0 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 143 / 2e-38 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 139 / 8e-37 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 139 / 3e-36 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 130 / 4e-33 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030072 [exp] 115 / 7e-30 AT1G55270 139 / 4e-39 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 119 / 3e-29 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10041299 [exp] 105 / 1e-24 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 104 / 2e-24 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.001G008000.1 pacid=42792785 polypeptide=Potri.001G008000.1.p locus=Potri.001G008000 ID=Potri.001G008000.1.v4.1 annot-version=v4.1 ATGCAAAAGATGGAGCATCATCGGTCATCAAATGGTCCAAGAGGGTTTAGAGTTCAAGCTCCACTAGTTGATTCCGCATCATGTTATTGCAAAGTAGATT CTGGTTTAAAAACAGTTGCTGAGGCAAGGAAGTTTGTTCCAGGATCAAAACTTTGTATCCAGCCTGATATCAATCCTAATGCACACAAGAGCAAGACCTC ACGCAGAGAGAGGACCCGAGTCCAACCACCACTTCTTCCTGGTCTACCTGATGATCTGGCCATTGCATGTCTGATTCGAGTTCCTCGAGCTGAACATCGA AAGCTCCGTCTAGTTTGTAAGAGATGGTACCGCCTCCTTGCTGGGAACTACTTTTATTCTCTTAGGAAAAGTCTTGGAATGGCAGAGGAGTGGGTTTATG TCATCAAGAGAGATCGTGATGGAAAGATCTCGTGGAATGCTTTTGATCCTGTCTATCAGATCTGGCAACCACTTCCACCAGTTCCTCGTGAATATTCTGG GGCCCTTGGTTTTGGTTGTGCTGTTCTAAGTGGTTGCCACCTATACTTATTTGGAGGAAAGGATCCACTAAGGGGGTCTATGAGACTAGTCATTTTCTAT AGTGTCCGGACAAATAAATGGCATAGGGCACCAGATATGCTTCGTAAGCGTCATTTCTTTGGTTCTTGTGTCATAAATAACTGCCTGTATGTGGCTGGTG GAGAGTGTGAAGGAATCCAAAGGACTCTCCGCTCAGCCGAGGTTTATGACCCTAACAAGAACCGGTGGAGCTTTATTTCAGATATGAGCACGGCTATGGT GCCTTTCATAGGTGTGGTTTATGATGGGAAGTGGTTTCTAAAAGGTCTTGGGTCCCACCGTGAGGTGATGAGTGAAGCCTACGATCCAGAAACTAGTACC TGGACCCCAATCAGTGATGGAATGGTTGCTGGTTGGCGCAATCCTAGCATCAGTTTAGATGGACATCTCTATGCCCTGGATTGCCGGGATGGCTGCAAGC TTAGGGTTTATGATGAAGCCTCAGATACATGGAACAAATTTATAGATAGCAAGCTCCATCAAGGGAGTTCTCATGCTCTGGAGGCAGCTGCTCTTGTTCC TCTCAATGGGAAGCTTTGCATTGTGCGGAACAACATGAGTGTTAGCCTGGTTGATGTTTCCAGTCCTGACAAACGTGTAGAGAGTAACCCTCACCTTTGG GAGAATATAGCCGGGAGAGGTCATCTCAGGACTCTTGTTACAAATATATTGTCAAGTATAGCTGGCCGAGGTTTGAAAAGTCACATTGTGCACTGTCAGG TGCTTCAAGCATGA
AA sequence Show only first row Show all	>Potri.001G008000.1 pacid=42792785 polypeptide=Potri.001G008000.1.p locus=Potri.001G008000 ID=Potri.001G008000.1.v4.1 annot-version=v4.1 MQKMEHHRSSNGPRGFRVQAPLVDSASCYCKVDSGLKTVAEARKFVPGSKLCIQPDINPNAHKSKTSRRERTRVQPPLLPGLPDDLAIACLIRVPRAEHR KLRLVCKRWYRLLAGNYFYSLRKSLGMAEEWVYVIKRDRDGKISWNAFDPVYQIWQPLPPVPREYSGALGFGCAVLSGCHLYLFGGKDPLRGSMRLVIFY SVRTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYDGKWFLKGLGSHREVMSEAYDPETST WTPISDGMVAGWRNPSISLDGHLYALDCRDGCKLRVYDEASDTWNKFIDSKLHQGSSHALEAAALVPLNGKLCIVRNNMSVSLVDVSSPDKRVESNPHLW ENIAGRGHLRTLVTNILSSIAGRGLKSHIVHCQVLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55270			Galactose oxidase/kelch repeat...		Potri.001G008000 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Potri.016G135100 [exp]	8.42	0.7253
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	9.94	0.7200	PP2.5
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Potri.006G151300 [exp]	14.73	0.6634
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	54.69	0.6129	MMK3.1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	58.86	0.6303
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.008G128900 [exp]	63.63	0.6372
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	71.55	0.6012
AT2G42780			unknown protein		Potri.012G059000 [exp]	83.97	0.6352
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	91.56	0.6628
AT2G18630			Protein of unknown function (D...		Potri.005G127401 [exp]	93.16	0.6232

Compare expression of checked genes

Potri.001G008000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.