Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G32940 236 / 4e-68 RNA-binding KH domain-containing protein (.1) AT5G51300 82 / 7e-16 splicing factor-related (.1.2.3) AT4G26480 44 / 0.0004 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216800 [exp] 982 / 0 AT3G32940 249 / 5e-73 RNA-binding KH domain-containing protein (.1) Potri.001G126400 [exp] 92 / 8e-19 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.003G107200 [exp] 87 / 3e-17 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039188 [exp] 366 / 5e-115 AT3G32940 255 / 2e-75 RNA-binding KH domain-containing protein (.1) Lus10013751 [exp] 362 / 2e-113 AT3G32940 240 / 8e-70 RNA-binding KH domain-containing protein (.1) Lus10038932 [exp] 88 / 2e-17 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10035015 [exp] 44 / 0.0003 AT2G38610 315 / 5e-108 RNA-binding KH domain-containing protein (.1.2) Lus10021676 [exp] 44 / 0.0003 AT2G38610 314 / 1e-107 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.001G008700.4 pacid=42788270 polypeptide=Potri.001G008700.4.p locus=Potri.001G008700 ID=Potri.001G008700.4.v4.1 annot-version=v4.1 ATGAGTGTGAAGAAGGTAGACCAGACATCTGCAGTTGAGCTTCAAAGTATTAAGATGACTGCAACAAGTTCTTCATCCGGTGCATCGACAACTAGTGGTC CAAAGGTGTCTTTATTTGCAGCTAAGTCAGGGTTTGTTATCCCTAAAAATAAACTTTTGGGTTCATTAGTTTCCATCGTCAAAGGAGGTAAAAAGCCGGG TAGTAAAAATGCAGTGAATGGAGAAAGTACCAATCAGGAACAGGTTCAGAGGAAAACCAAATGGGGTCCTGATTTAACACAAGATGCTTCTGTTAAAAGG GGAAGAGCCTTGGCATACCAGATTAGAGTGGATCAAATTGTGCAACAACTGGAATTGGGAATTCCAGAACCTGGGAGGGATGGAGACTCACATGACTCCA ATGAGCTTGAAGATCCCAAATCTTCGATTCCACAAATCCATACTAAGAACTCTGAGATCTTGGAACTTGAAAAACAGGAAGCTATAGGCATGTTTGATGT TTCTCATCAAATCATGTTACTTTTTCCATTTTGTTATGTCTGGCTTGATTCTATCTTTCTTGATTTTCCAGGTGAGATACTTATATTGAATCCAAGCTAC AAGGCTCCACCCAATTATAAGCCTTTGCTAAAAGAGACCACAGTTCCCATCCCTGTCAAGGAGTATCCTGGATATAATTTTATTGGTCTAATATTTGGGC TTGGAAGCGAGACTCAGAAGCGATTAGAAAAGGAAACTGGAGCCAAAATACAAGTACATGGTTCCAACGTGCATACAGGAGAGAAGGTTGAGATTTCTCC ATCTGATGGCAATGAGACTAAGGTTGCTTATGAGGAGTTGAGTGTTCATGTAACAGCCGACACATTTGAGAAAGTTGACGCAGCTGTTGTCCTGATTGAA TTGCTAATCACCTCAGTATCAGGAAATTTAGCGGCTGGGGATAATGCAAATGTTAGTCAGAATCAGGCGGCCTCTACTGCTTTTATGGTCTCTACTGCTG TAAACCAAGGAGTGGTGCTATCTTTTACTCCTCAACAAGGCCAGTTCCAATATCAAAATTCATGGCTCCCTGCTGCCACACCTCTACATCCACCTCCGGG CTTAATTTTCCCTCAGACTTCTTCAGCACCAGTTTTAAACAATCCTATACCTTTACAGTCAGCATCTTTCAATTCTTCAACCATGCCTTCATTATTCGGG CCTAGACTGGCACAGGCCTTTTCAAATCCATATCAGCCTAGAAATTTTCCCATGCCTACTCCACAGCCTCAATCTTTTACTGGTAGCCAGCCCCACCCAA CAGGGCTGTACTCTGTTGCAAGGCCACCATTACTTCAACCCTCGTCAAGTGGTTCACATGATGGGCTTTTAGTCCCTTCTGGGTGGTCTGGATCTCCTGC AAGTGTTCCGGCATCATTAGGTTTTGTCAACATGGGACAAACAACAACTCCTATAGTTCCCTCACCTGGTCCATGGCCTACTGTTCCACAGCTAGGTTTT CCATCCAATGCACCACCTCCAAATGCAGCTAATATGGTTTCTCCTGTAACCTTCCCACCGGGACCATCCTCTCTGCAATCACACAGTGTTTCTATGAATC ATCCTACCCTAATCCAATCTTCACTGGTTGCTCCTTTGCCAATTTCATCCATAAACCCGGTACTTGGTTCCACGCCAATTTCAGGAGTTGTAGGAGCTTT TTCTGGAACTACCTCAAATTTTGCTTCCATGAGATCACCCACAATAACAGATGCAAAAATACAGCACTCTGGTCCTGGTGATTTTACTTTTCAACCACAT CATCTGCAGAATCCAGCTCCCCAAATAGCTCCCAGGCTTAGCAGTCATCATGCTGCTCAAAACGGTCCACTTCCTAGACCCATGATGCAATCGCCAGCAC CTCAAGGACCACCTTTCCACTTCGAGGTCCCTAATTCAACTCCTCTACCTGGCAGGCAGATGTTTCCTAGACCACAGGTCAGCAACCAAATGGGTCAAGT CCCCTTTGTTGGAAATCCTACTGGTCCCTCGCTTCCCCCCAGCCTTCCAGCATTTTCAAATGCAAATTCATTTGGACAACCAGTCATGCAGATGGTGTCG AGGAACTTAAGTTCAACTCCCCACATACCCTATTTAACAGGTCCTTTACCTCCCAGACCGGGAAACCCCTTGCAACTTCAGCAGAATTATCCAGTTCCAA TAGCTCCTCGAGGACAATCATTTGCTCCGAATCAGCAGCCTTTCATCTCCTTGGCATCTGCTAGACCAGCTTCATTCCACGGAGGTCAGCATGTTTATGA TCCATTTTCACCTACTTCTGTGTCAACTGCGTCTCAACGGCAAGGAGCTAATCTAGGAGAGGGAAGAAAGCCAGAGAATGATCCACTGTAA
AA sequence Show only first row Show all	>Potri.001G008700.4 pacid=42788270 polypeptide=Potri.001G008700.4.p locus=Potri.001G008700 ID=Potri.001G008700.4.v4.1 annot-version=v4.1 MSVKKVDQTSAVELQSIKMTATSSSSGASTTSGPKVSLFAAKSGFVIPKNKLLGSLVSIVKGGKKPGSKNAVNGESTNQEQVQRKTKWGPDLTQDASVKR GRALAYQIRVDQIVQQLELGIPEPGRDGDSHDSNELEDPKSSIPQIHTKNSEILELEKQEAIGMFDVSHQIMLLFPFCYVWLDSIFLDFPGEILILNPSY KAPPNYKPLLKETTVPIPVKEYPGYNFIGLIFGLGSETQKRLEKETGAKIQVHGSNVHTGEKVEISPSDGNETKVAYEELSVHVTADTFEKVDAAVVLIE LLITSVSGNLAAGDNANVSQNQAASTAFMVSTAVNQGVVLSFTPQQGQFQYQNSWLPAATPLHPPPGLIFPQTSSAPVLNNPIPLQSASFNSSTMPSLFG PRLAQAFSNPYQPRNFPMPTPQPQSFTGSQPHPTGLYSVARPPLLQPSSSGSHDGLLVPSGWSGSPASVPASLGFVNMGQTTTPIVPSPGPWPTVPQLGF PSNAPPPNAANMVSPVTFPPGPSSLQSHSVSMNHPTLIQSSLVAPLPISSINPVLGSTPISGVVGAFSGTTSNFASMRSPTITDAKIQHSGPGDFTFQPH HLQNPAPQIAPRLSSHHAAQNGPLPRPMMQSPAPQGPPFHFEVPNSTPLPGRQMFPRPQVSNQMGQVPFVGNPTGPSLPPSLPAFSNANSFGQPVMQMVS RNLSSTPHIPYLTGPLPPRPGNPLQLQQNYPVPIAPRGQSFAPNQQPFISLASARPASFHGGQHVYDPFSPTSVSTASQRQGANLGEGRKPENDPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	0	1
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	1.73	0.8927	GI.1
AT1G15780			unknown protein		Potri.003G012400 [exp]	2.00	0.9195
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	2.44	0.8765
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	3.74	0.8678
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.007G003200 [exp]	4.47	0.8709
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	4.58	0.8757
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	6.00	0.8747
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	6.32	0.8828
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	8.06	0.8799
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	8.06	0.8680

Compare expression of checked genes

Potri.001G008700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.