Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55250 993 / 0 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT2G44950 400 / 1e-125 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT4G03510 49 / 7e-06 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT5G05130 48 / 4e-05 DNA/RNA helicase protein (.1) AT3G16600 45 / 0.0002 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G74990 42 / 0.0002 RING/U-box superfamily protein (.1) AT3G58030 44 / 0.0005 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141300 [exp] 501 / 4e-164 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.014G055800 [exp] 481 / 9e-157 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.003G216651 [exp] 416 / 8e-138 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.006G035700 [exp] 49 / 1e-05 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G148300 [exp] 46 / 5e-05 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.016G034000 [exp] 47 / 7e-05 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 46 / 0.0002 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.001G082200 [exp] 44 / 0.0003 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.002G259000 [exp] 44 / 0.0005 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041689 [exp] 1153 / 0 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10024057 [exp] 1084 / 0 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10042890 [exp] 474 / 2e-153 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10028187 [exp] 335 / 1e-101 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10022569 [exp] 45 / 9e-05 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10011184 [exp] 45 / 0.0002 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 45 / 0.0002 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10039001 [exp] 44 / 0.0006 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011027 [exp] 44 / 0.0008 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10033697 [exp] 42 / 0.001 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G008800.3 pacid=42792643 polypeptide=Potri.001G008800.3.p locus=Potri.001G008800 ID=Potri.001G008800.3.v4.1 annot-version=v4.1 ATGGAAAGCTCAGAATCAGAAGAGCCAGAGAAGAAGAGAACTCACTTGAATTCCCCGCTTTCGCCTACTATGGCTCGTAACTCTTCTACTTCTCCTCCCG ATAACAAATCTGTTGATGTTACAGTTCTTCAATGCCAGAATCAAAAGCTTGTTCAGCAATTAGATGTTCAGAAACATGAATTCCATGGTCTTGAAGCCAA AATTAAAGAACTAAAAGACAAACAAGCTTCATATGATGGCATGTTGATCACAGTGAACAAACTATGGAATCAGTTGGTTGATGATTTAGTACTACTTGGC ATACGAGCTGGAGGAGGCCAAGATTTTTTGCAAATCTTGGATCATGCAGATCATTCAGGAGGTTCAATTCCACCATGCCCTGCTGAGCAGATATTTCTCT GCAGACTGCTAAAGACTGATTCTATTCAAAGCAATGGAAATGACGGAATTGTTAGATCTGTAGAAGAAGCCCTTGCCTCACGACACTCTTCTACTATGGA GCTGATGAAATTTCTTGAAGATACTATTGATGCTCAGAGGGCAAAAACTGAGAGCATAGTAGAGAATTTGAATGGAAAGCTATATACAGAAGATGCCATC ATCCAGTTGTCCAAGATTGATGATATGATGAAAGATGAGGCTAAGAATCTGCGTGAGGTGATTGATGTTCTCCACTCAAAGCATAAGGAATATTCTGATG AGATTCAGACTTGTATAAGCAACCATTCTACAGATCAATCTGAGATTAAACGAGTTGCAGGTGATTTGGAAGAGATCATGGCTGAACTTGAAGAAAGTAG AAGAAAACTAGTCAATTTGAAAATGCAAAAGGATGCAGCGGTTGGGATTCATATGCCGGCCCCAAGTGCAGTAAATGGAAACTTGTCACCTGAAAAGACT GCAGATAGGTCGAAGCGTTTAAGGGAATTGAGGGATTCCCTTGACGAGACGAAGATTCTGGCAGCTGACCGTCTTTCCGAGCTTGAAGATGCACGAGATG AAAATCAGACCTTATCAAAAGAATTGGAAGATCTTGAAAATGAACTCAAGGATGACAAACATATATATTCATCTCGTCTCTACAGTTTAGTAGATGATCA GCTCCAGCATTGGAATGATGAAGTGGAACGATACAAAACACTGACAGATTCTTTGCAGGCCGACAGGTCTTTTGTTGTGAGAAGGGAGAAAGAAGTGAAA GCAAAAGTAGAGTCAGCAGATGCTGCAAGAAATACCATGGATACTGCAGTGCCTAGGATTGAAGAGCTCGAGCTGAAGCTGCGCAAGTGTATTATTGAAA AAAATGATCTTGAAATTAAAATGGAAGAAGCTGTTCAGGATTCAGGGAGAAAGGATATTAAAGAAGAGTTTCGTGTTATGGCCTCAGCTTTGTCTAAGGA AATGGGCATGATGGAAGCACAGTTGAACCGATGGAAACAGACTGCACACGAAGCAGTTTCCTTGCGTGAAGAATCTAAATCACTAAAAGCATTGTTAAAT GAAAAGACAAATGAACAAAAATGCTTAGCAGGCAAATGTGCTGAACAGGTGGCAGACATAAAATCTCTTAAGACTTTGATTGAGAAGTTGCAGAAGGAGA AACAGGAACTGCAAATAGTCTTGGACATGTATGGACAGGAGGGCTATGACAACAGAAATCTTAATGAAATAAAAGAATCAGAACGTAGAGCTCGTACCCA AGCTGAAGTTCTGAAAAGCGCATTGGATGAACACAGTCTAGAGTTGAGAGTCAAAGCTGCTAATGAAGCTGAGGCTGCTTGCCAACAAAGGCTTTCTGCT ACTGAAGCTGAAATAGCTGAATTAAGAGCCAAATTGGATGCTTCTGAGCGAGATGTTTCAGAGCTTAAAGAAGCCATCAAAAGTAAAGACAAGGAGGCTG AGGCATACATTTCTGAAATCGAGAACATTGGCCAAGCTTATGAAGATATGCAGACACAAAACCAACACTTATTGCAGCAAGTCGGTGAGAGGGACGACTA CAATATCAAGCTGGTATCTGAGAGTGTGAAGACAAAGCAAACTCAAAACTTTCTACTCTCCGAGAAGCAGGCACTGGCAAAGCACCTTCAACAAGTTAAT GTGTCAGTGGAATCATTAAAATTGAGGATTGCTCAAAGTGAAGAGCAGATGAAGCATTGTTTGATAGAGGCAGTTAGATCCACTGAAGAAGACAGACATC TTGCAATCAATCTTGAAAGTGCACGGTGGGAATTGATGGATGCCGAGAAGGAGTTGAAGTGGCTTAAGTATGCTGTTTCTTCTTCTGAAAAGGAGTATGA GCAGGTCCAGAAGAAGATAAATGAAATCCAAACGGAACTAGACAGTGAAAGGAGTGAAAGGAGAAGGCTTGAGGAAGAGCTCATGGAGGTGAACAATAAA GTTGCTGAGTTGACTTCTGAAACTGGTGCGGCTGCAATACAGAGACTTCAAGATGAGATAAAAGATTGTAAAAGTATTCTCAAGTGTAGTGTCTGTTCCG ACCGGCCTAAGGAGGTTGTGATTGTGAAATGCTATCATCTGTTCTGCAATCCATGTATCCAAAGGAATTTAGAGATTCGCCATCGGAAATGCCCTGGATG TGGAACTGCATTCGGTCAGAATGATGTTCGGTTTGTTAAGATATGA
AA sequence Show only first row Show all	>Potri.001G008800.3 pacid=42792643 polypeptide=Potri.001G008800.3.p locus=Potri.001G008800 ID=Potri.001G008800.3.v4.1 annot-version=v4.1 MESSESEEPEKKRTHLNSPLSPTMARNSSTSPPDNKSVDVTVLQCQNQKLVQQLDVQKHEFHGLEAKIKELKDKQASYDGMLITVNKLWNQLVDDLVLLG IRAGGGQDFLQILDHADHSGGSIPPCPAEQIFLCRLLKTDSIQSNGNDGIVRSVEEALASRHSSTMELMKFLEDTIDAQRAKTESIVENLNGKLYTEDAI IQLSKIDDMMKDEAKNLREVIDVLHSKHKEYSDEIQTCISNHSTDQSEIKRVAGDLEEIMAELEESRRKLVNLKMQKDAAVGIHMPAPSAVNGNLSPEKT ADRSKRLRELRDSLDETKILAADRLSELEDARDENQTLSKELEDLENELKDDKHIYSSRLYSLVDDQLQHWNDEVERYKTLTDSLQADRSFVVRREKEVK AKVESADAARNTMDTAVPRIEELELKLRKCIIEKNDLEIKMEEAVQDSGRKDIKEEFRVMASALSKEMGMMEAQLNRWKQTAHEAVSLREESKSLKALLN EKTNEQKCLAGKCAEQVADIKSLKTLIEKLQKEKQELQIVLDMYGQEGYDNRNLNEIKESERRARTQAEVLKSALDEHSLELRVKAANEAEAACQQRLSA TEAEIAELRAKLDASERDVSELKEAIKSKDKEAEAYISEIENIGQAYEDMQTQNQHLLQQVGERDDYNIKLVSESVKTKQTQNFLLSEKQALAKHLQQVN VSVESLKLRIAQSEEQMKHCLIEAVRSTEEDRHLAINLESARWELMDAEKELKWLKYAVSSSEKEYEQVQKKINEIQTELDSERSERRRLEEELMEVNNK VAELTSETGAAAIQRLQDEIKDCKSILKCSVCSDRPKEVVIVKCYHLFCNPCIQRNLEIRHRKCPGCGTAFGQNDVRFVKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.001G008800 [exp]	0	1
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.010G154000 [exp]	2.64	0.8624	Pt-SPL1.4
AT5G51340			Tetratricopeptide repeat (TPR)...		Potri.019G133000 [exp]	4.79	0.8107
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G230000 [exp]	5.19	0.8309
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	7.48	0.8481
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	9.48	0.8621
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	10.81	0.7944
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	10.95	0.8446
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	12.00	0.8189
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	12.24	0.8534	TTN8.2
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	16.97	0.8330

Compare expression of checked genes

Potri.001G008800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.