Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55230 364 / 8e-127 Family of unknown function (DUF716) (.1) AT1G55240 354 / 2e-122 Family of unknown function (DUF716) (.1) AT5G19870 297 / 1e-100 Family of unknown function (DUF716) (.1) AT1G49470 170 / 1e-50 Family of unknown function (DUF716) (.1) AT1G32120 134 / 1e-34 unknown protein AT1G55220 66 / 5e-13 unknown protein AT3G01360 60 / 5e-10 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G216500 [exp] 513 / 0 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 419 / 5e-148 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 382 / 1e-133 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 168 / 3e-50 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.003G100700 [exp] 138 / 1e-38 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 132 / 2e-36 AT1G32120 377 / 2e-122 unknown protein Potri.005G122800 [exp] 59 / 2e-09 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.010G067000 [exp] 41 / 0.0005 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 41 / 0.0009 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013749 [exp] 369 / 1e-128 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10039191 [exp] 363 / 5e-126 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 152 / 1e-43 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 139 / 7e-39 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10014806 [exp] 135 / 2e-37 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 132 / 3e-36 AT1G32120 429 / 3e-142 unknown protein Lus10028821 [exp] 52 / 2e-07 AT3G01360 289 / 5e-97 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10017462 [exp] 45 / 4e-05 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10041505 [exp] 43 / 0.0002 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10012588 [exp] 43 / 0.0002 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.001G009000.1 pacid=42788949 polypeptide=Potri.001G009000.1.p locus=Potri.001G009000 ID=Potri.001G009000.1.v4.1 annot-version=v4.1 ATGGGCAGTTTGATAGGGCATGTATTACCAGGCATGGCCTTCTTCATACTAGGTTTATGGCATCTCTTTAACCACGTAAAACTCCACTCTCTACACCCAA ACTCTTACACTTCCTCTCCATGGTTCCCCGTCACAAAACCAAGGTATCTAGAGCTCTATTTGATCATGTTAGGAAGCTCCATTTCCATAACAATGGAACT CTTCATTGGGCCAGAAAAACACCAACCCTTCGATGTTGATGGAACCATACCATCAAACCATCTCCGAAACTTTGAACACTCTTTCATATCAATGTCTTTC TTTGTCTATGCAACTTTCGCTCTGCTTCTTGATAGAATTGGAGCTAAAGCAAAATGCGGTCTAACACATCTTCTAGGGGCAATAGCCTTTGGCCAACAAC TTCTCATGTTCCACCTCCACTCGACTGACCACAAGGGTCTTGAAGGTCAATACCATTTGCTTCTACAACTTGTCGTATCTATATCTTTAGTCACCACTCT TATGGGAATTGGCTTCCCTAGGAGTTTCTTGGTTAGCTTTGTTAGGTCTCTTAGTATTTTGTTCCAAGGAGTATGGTTCATGGTAATGGGCTTTATGTTA TGGACTCCAAGGTTGATCCCCAAGGGTTGCTCACTTTACAACGATGATGGTCACAAAATAGTCCGATGCGCTAGTGAAGAGGCCTTGCATCGTGCAAAAT CATTAGTGAACATTCAATTTAGCTGGCTTGTTAATGGAATCACCATTTTTGCTATAACCTTGTATTTGGCTTTGGTTGAAAAATATAGCAAGAATGTCAA GTACTCGTCATTGGCAAAGGAACTTGAAGAAATGCCCGAAGACTCTAGCGACATTGAAACAGAAAAGAAGAACAATTTGAGCGACTCGAAGTGTTTGGTT CGTGGGGAAAGCTTAAGAGGGTTTGCCCCTTTTGACATGGATGGGCAGAGGATGTGGAAAAATTGA
AA sequence Show only first row Show all	>Potri.001G009000.1 pacid=42788949 polypeptide=Potri.001G009000.1.p locus=Potri.001G009000 ID=Potri.001G009000.1.v4.1 annot-version=v4.1 MGSLIGHVLPGMAFFILGLWHLFNHVKLHSLHPNSYTSSPWFPVTKPRYLELYLIMLGSSISITMELFIGPEKHQPFDVDGTIPSNHLRNFEHSFISMSF FVYATFALLLDRIGAKAKCGLTHLLGAIAFGQQLLMFHLHSTDHKGLEGQYHLLLQLVVSISLVTTLMGIGFPRSFLVSFVRSLSILFQGVWFMVMGFML WTPRLIPKGCSLYNDDGHKIVRCASEEALHRAKSLVNIQFSWLVNGITIFAITLYLALVEKYSKNVKYSSLAKELEEMPEDSSDIETEKKNNLSDSKCLV RGESLRGFAPFDMDGQRMWKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	0	1
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	3.74	0.9919
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.018G004200 [exp]	5.29	0.9866
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	6.78	0.9879
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	6.92	0.9869
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.003G019900 [exp]	7.74	0.9859
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	8.66	0.9869
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	10.67	0.9874
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Potri.014G152400 [exp]	11.74	0.9724
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	13.26	0.9858
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	13.74	0.9864

Compare expression of checked genes

Potri.001G009000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.