Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69770 852 / 0 CMT3 chromomethylase 3 (.1) AT4G19020 768 / 0 CMT2 chromomethylase 2 (.1) AT1G80740 745 / 0 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT4G14140 209 / 2e-55 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT5G49160 207 / 1e-54 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G08990 204 / 1e-53 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G13610 199 / 6e-52 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100000 [exp] 774 / 0 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 437 / 6e-141 AT1G69770 221 / 7e-62 chromomethylase 3 (.1) Potri.T046100 [exp] 228 / 3e-61 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.018G138000 [exp] 227 / 5e-61 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 224 / 4e-60 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026024 [exp] 951 / 0 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 942 / 0 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 937 / 0 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10010796 [exp] 674 / 0 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10004295 [exp] 213 / 3e-56 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 211 / 7e-56 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10033679 [exp] 104 / 3e-25 AT1G69770 89 / 2e-20 chromomethylase 3 (.1) Lus10016308 [exp] 52 / 3e-08 AT4G19020 58 / 1e-11 chromomethylase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00145 [poplar] [flax] DNA_methylase C-5 cytosine-specific DNA methylase CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0049 [poplar] [flax] PF01426 [poplar] [flax] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Potri.001G009600.1 pacid=42788154 polypeptide=Potri.001G009600.1.p locus=Potri.001G009600 ID=Potri.001G009600.1.v4.1 annot-version=v4.1 ATGCCGCGAAAACGACAGCGCAGCACAGCTTCAAAGCCAGAAACGTCGTCGTCTTCTCCTCCAAAAACGCGAAAGATGATGTCGACGACGACAGCGCCGA AACAGAGTCGTTTGAATGAGAAAAAAGCAGAGGAAGAGCAGTCGACAGCGTCTACTCGGAGTCGTTTGAAGGAGAAAAAAGCAGAGAAAGAGCAGTCGAA AGCGGCTGCGCGGAGTTGTTTGAAGGAGAAAAAAGCAGCGGAAGAGCAGTTGACAACGGCTACTCGGAGTCGTTTGATGGAGAAAGAAGCAGAGGAAGAG CAGTCGACAGCGCCGAATCGGAGTCGTTTGAGGGAGAAGAAAGTGAAGAAGGAGGAGACAGAGGAGGTGTTCTTAGATGCAGAGGAGGATGATACGAACT CGATTGATGAAGTAGGAGCTAAAATGGGGACTGATAACGGGGATTCTAGATCTGAAACGAAGGAGAAAGAGAAGGAGAAACGCGGATCTGGCAAAACAAA GAAGATATCGACTCCTGAGAAGGCTAAGGAGGAGGATGGAACGCCGGCGAGGTTTGTCGGAAATCAAGTTCCTGATGCAGAAGCGAGAAAGAAGTGGCCT CATCGATATGCTAATAAGATAAAGAACAAAACACCAATTTCAAAACCTTCAAACAGCTTGGATGATTCTGAAGAGATAATAAAAGCTAGATGTCATTACA AGCGGGCAGAGGTTGATGGGATCATCTATAATCTCTATGATGATGCTCATGTTCAAGCTTCTGATGGAGAAGCAGACTATATATGTAGGATAATCGAGAT GTTCGAGTCTGAAGACAGGACCCCACATTTTACTGCTCAATGGTACTATAGGTCTACTGACACGATTATTAAAGATAAGTACATTTCGGATCCGAAGTGT GTTTTCTTTTCTGAGATTCGAAATGACAATCCCTTGGACTGCCTTACTCGGAAGCTGAAAATTGTCAGATTGGCACTTGGTGTGGATTCAGAGACTAGAC GGGCAAAGACCTTAAATTGCGACTTCTATTGTGACATGCTTTATTTGCTTCCATACTCCACCTTTGTCAAGCTACCATCAGAAAACAATACAACTGCACC TGAGAGTTCATCAACAATATCCAGTGATATTGATGCTGCTGGGGTAAAGTTTGAGTGTGATGAGGTTTGTGAAAGCAGTGGCCGTAGGAAATCAGAGGTG GCTTTATTAGATTTGTATTCTGGCTGTGGAGCAATGTCTACTGGTCTTTGTCTTGGTGCTAACTTGTCTGGTTTAAATCTTGTCACGAAATGGGCTGTTG ACTTGAATAAGCATGCATGTGAAAGCTTAAGGTTGAATCATCCGGAGACACAGGTGAGAAATGAGACTGCTGAAGACTTCTTAATGCTACTGAAAGAGTG GGAAAAACTCTGCATAAGGTTTTCCCTTGTGAAAAATGATGACCCGGAAAAACAACAAACATATAGTTTTGACATGGATGATGAGGATGATGATGATGAT GAGGAGGAGGAGGATGATGACAACAATGATGTCAGTGACAATAATGATGACTCTGAAGTGTTCGAGGTGGAGAAAATTCTTGAGGTGTGCCATGGAGATC CCAAGGAGATTGGTGGCCAGCGTGACCTCTACTTCAAGGTTAGTTGGAAAAATTATGGACCTGATTATGACACTTGGGAACCAATTAGTGGTTTGAGCAA TTGTCGGGAAGCTATAAAGAAGTTTGTCATGCACGGCTACAAGTCAAATATTCTGCCATTACCAGGAGATGTTGAAGTGATTTGTGGTGGACCTCCATGT CAAGGAATTAGTGGCTTCAATCGCTTTAGGAATGTTAAAAATCCTTTGGAGGATCCAAAAAACAAGCAGCTTGTTGTTTTTATGGACATAGTAGACTTTC TCAAGCCAAAGTTTGTGCTGATGGAGAATGTGGTTGACCTTCTGAAGTTTGCTGATGGATTTCTAGGACGATATGCCATGGGTTGCCTTGTAAGTATGAA ATACCAAGCTCGGTTGGGTATGCTGGCTGCCGGGGCATATGGTCTTCCACAGTTTCGTATGCGAGTTTTTCTATGGGGTGCTTGCGCTACTGAGAAGTTG CCACAGTATCCTCTTCCCACCCATGATGTTCTTGTTAGGGGTGTTGTTCCTCTAGAGTTTGAGGGTAATACAGTGGCTTACGAGGAGGGTGTTAAACCTC AATTAGAAAGGAAATTATTTTTAGAGGATGCAATATCTGACCTGCCTGCGGTTGCGAACGATGAAAAGCGTGATGAGATGCCATATGGTGAATCTCCTAA AACAGAATTTCAACGAATGATTAGATTGAAGAAAATGGGTTTAGAATTAAATGATTTATTGTTTGATCATCGTCCTCTTGAACTAAATGACGATGACTAT CAACGAGTTTGTCAAATCCCGAAGAGAAAGGGAGGAAATTTTAGGGATTTACCTGGTGTACGAGTAAGACCTGATAAGAAGGTGGAGTGGGATCCCGAAG TTCCAAGGCAATACTTGAGCTCAGGAAAACCCTTGGTTCCTGATTATGCGATGACTTTTGTCAATGGAAGTTCTTCCAAGCCATTTGCTCGTTTATGGTG GGATGAAACTGTCCCAACTGTTGTGACCCGTGCGGAGCCTCATAATCAGGCAATCATGCATCCTGAGCAAGATCGAGTGTTAACTATTAGAGAGAATGCA AGATTACAAGGATTTCCTGATTATTATCAGCTCTGTGGACCTATTAAAGAAAGGTACATTCAAGTTGGGAATGCAGTGGCGGTTCCTGTAGCCAGGGCTC TCGGGTATGCTTTAGGAAGGGCATTTCAAGGATTTGCCGGTGATGATCCTGTGTTTAGCTTGCCAAAAAAGTTCCCAAGGATTACCGAAGATCCCTCTTC TTCATCTGAAGCTCAATGCTAA
AA sequence Show only first row Show all	>Potri.001G009600.1 pacid=42788154 polypeptide=Potri.001G009600.1.p locus=Potri.001G009600 ID=Potri.001G009600.1.v4.1 annot-version=v4.1 MPRKRQRSTASKPETSSSSPPKTRKMMSTTTAPKQSRLNEKKAEEEQSTASTRSRLKEKKAEKEQSKAAARSCLKEKKAAEEQLTTATRSRLMEKEAEEE QSTAPNRSRLREKKVKKEETEEVFLDAEEDDTNSIDEVGAKMGTDNGDSRSETKEKEKEKRGSGKTKKISTPEKAKEEDGTPARFVGNQVPDAEARKKWP HRYANKIKNKTPISKPSNSLDDSEEIIKARCHYKRAEVDGIIYNLYDDAHVQASDGEADYICRIIEMFESEDRTPHFTAQWYYRSTDTIIKDKYISDPKC VFFSEIRNDNPLDCLTRKLKIVRLALGVDSETRRAKTLNCDFYCDMLYLLPYSTFVKLPSENNTTAPESSSTISSDIDAAGVKFECDEVCESSGRRKSEV ALLDLYSGCGAMSTGLCLGANLSGLNLVTKWAVDLNKHACESLRLNHPETQVRNETAEDFLMLLKEWEKLCIRFSLVKNDDPEKQQTYSFDMDDEDDDDD EEEEDDDNNDVSDNNDDSEVFEVEKILEVCHGDPKEIGGQRDLYFKVSWKNYGPDYDTWEPISGLSNCREAIKKFVMHGYKSNILPLPGDVEVICGGPPC QGISGFNRFRNVKNPLEDPKNKQLVVFMDIVDFLKPKFVLMENVVDLLKFADGFLGRYAMGCLVSMKYQARLGMLAAGAYGLPQFRMRVFLWGACATEKL PQYPLPTHDVLVRGVVPLEFEGNTVAYEEGVKPQLERKLFLEDAISDLPAVANDEKRDEMPYGESPKTEFQRMIRLKKMGLELNDLLFDHRPLELNDDDY QRVCQIPKRKGGNFRDLPGVRVRPDKKVEWDPEVPRQYLSSGKPLVPDYAMTFVNGSSSKPFARLWWDETVPTVVTRAEPHNQAIMHPEQDRVLTIRENA RLQGFPDYYQLCGPIKERYIQVGNAVAVPVARALGYALGRAFQGFAGDDPVFSLPKKFPRITEDPSSSSEAQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	1.00	0.9495	DMT901,Pt-MET1.2
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	2.44	0.9394
AT5G38690			Zinc-finger domain of monoamin...		Potri.018G024400 [exp]	4.24	0.8964
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	5.47	0.9337	Pt-UBP21.2
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	5.65	0.9321
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	6.92	0.9285	Pt-SOM1.1,CHR905
AT5G49110			unknown protein		Potri.010G011800 [exp]	10.86	0.8588
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	10.95	0.9307	TOP2.2
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	11.95	0.9076	Pt-CPP1.22
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	13.78	0.8964

Compare expression of checked genes

Potri.001G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.