Plant FIBer expression Database

Potri.001G009800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G34860 201 / 6e-66 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
AT5G06130 45 / 1e-05 chaperone protein dnaJ-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G210500
[exp]
46 / 6e-06 AT5G06130 401 / 2e-141 chaperone protein dnaJ-related (.1.2)
Potri.005G237800
[exp]
42 / 7e-05 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Potri.012G114200
[exp]
41 / 0.0002 AT5G61670 380 / 3e-133 unknown protein
Potri.002G023600
[exp]
40 / 0.0003 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Potri.001G049900
[exp]
39 / 0.001 AT4G13670 318 / 4e-106 plastid transcriptionally active 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024221
[exp]
201 / 2e-66 AT2G34860 171 / 2e-54 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Lus10023593
[exp]
164 / 1e-51 AT2G34860 124 / 1e-35 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Lus10022688
[exp]
47 / 3e-06 AT5G06130 388 / 4e-136 chaperone protein dnaJ-related (.1.2)
Lus10014223
[exp]
46 / 4e-06 AT5G06130 295 / 1e-102 chaperone protein dnaJ-related (.1.2)
Lus10016713
[exp]
45 / 1e-05 AT5G61670 447 / 2e-159 unknown protein
Lus10002040
[exp]
39 / 0.0007 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Lus10016993
[exp]
40 / 0.0008 AT5G06130 404 / 4e-142 chaperone protein dnaJ-related (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G009800.14 pacid=42790589 polypeptide=Potri.001G009800.14.p locus=Potri.001G009800 ID=Potri.001G009800.14.v4.1 annot-version=v4.1
ATGGCATCGTCATTATTATCTACTTCTCATCTCTCAGTTTTCCCAGAACGCCTGTCTTTATACTCTAAACCCTCCCAGCACCACTTACTTAATGTGAAGC
CAGTTGGGATTCGTGTGAAATCAAGTTTGGAAGATGAAAGCTCCTCGTCCTCTGGAGGTTTCGATGACCCATCACAGTCAATCAAGATGAAGGAATCTCA
ATTGTCAACATCAAGGCGCCAGTGTCTTTCTTGCTTGTGTTCAACCTTAGTTTTAATCGGTACTTCAGCAACTTCCATTTCGATCCCAAAAGCAATTGCC
ATGGATGGAAAAGAAAGACCTGTATGCCGGAATTGTTTGGGCAGTGGTGCTGTACTTTGTGATATGTGCGGTGGTACCGGAAAATGGAAAGCCCTCAACA
GAAAACGAGCTAAAGATGTTTATGAGTTTACAGAATGTCCAAATTGTTATGGTCGAGGGAAACTCGTTTGTCCTGTTTGTTTAGGTACTGGTTTACCAAA
TAACAAAGGTCTTCTAAGGAGGCCTGATGCACGGCAATTACTTGATAAGATGTACAATGGTCGGATACTGCCTGGTTCTTAA
AA sequence
>Potri.001G009800.14 pacid=42790589 polypeptide=Potri.001G009800.14.p locus=Potri.001G009800 ID=Potri.001G009800.14.v4.1 annot-version=v4.1
MASSLLSTSHLSVFPERLSLYSKPSQHHLLNVKPVGIRVKSSLEDESSSSSGGFDDPSQSIKMKESQLSTSRRQCLSCLCSTLVLIGTSATSISIPKAIA
MDGKERPVCRNCLGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGLPNNKGLLRRPDARQLLDKMYNGRILPGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G34860 EDA3 embryo sac development arrest ... Potri.001G009800
[exp]
0 1
AT5G35100 Cyclophilin-like peptidyl-prol... Potri.006G189900
[exp]
1.41 0.9886
AT1G71500 Rieske (2Fe-2S) domain-contain... Potri.019G073900
[exp]
2.82 0.9864
AT5G36120 atylmg3, CCB3 "cofactor assembly, complex C ... Potri.005G199000
[exp]
4.00 0.9767
AT4G18370 DEGP5, DEG5, HH... PROTEASE HHOA PRECUSOR, DEGP p... Potri.011G083300
[exp]
4.47 0.9841 Pt-HHOA.1
AT5G20935 unknown protein Potri.009G155300
[exp]
4.89 0.9851
AT1G26220 Acyl-CoA N-acyltransferases (N... Potri.008G113600
[exp]
6.48 0.9831
AT2G43030 Ribosomal protein L3 family pr... Potri.013G070100
[exp]
6.92 0.9820
AT3G47430 PEX11B peroxin 11B (.1) Potri.003G108900
[exp]
7.34 0.9738
AT1G60000 RNA-binding (RRM/RBD/RNP motif... Potri.010G065600
[exp]
7.74 0.9730 RNP1.1
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Potri.003G121600
[exp]
8.36 0.9838

Potri.001G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.