Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58060 528 / 0 Cation efflux family protein (.1) AT1G79520 335 / 9e-113 Cation efflux family protein (.1.2) AT1G16310 333 / 2e-111 Cation efflux family protein (.1) AT2G39450 297 / 1e-97 ATMTP11 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010200 [exp] 737 / 0 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 579 / 0 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 558 / 0 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.010G211300 [exp] 341 / 4e-115 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 338 / 8e-114 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 335 / 2e-112 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 334 / 3e-112 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 331 / 4e-111 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 327 / 7e-109 AT1G16310 572 / 0.0 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029304 [exp] 568 / 0 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 567 / 0 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 352 / 6e-118 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 350 / 6e-118 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 333 / 9e-112 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 328 / 1e-109 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016242 [exp] 124 / 8e-35 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10000061 [exp] 98 / 2e-23 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10029300 [exp] 60 / 4e-11 AT3G58060 61 / 3e-13 Cation efflux family protein (.1) Lus10016244 [exp] 62 / 5e-10 AT3G58050 851 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family PF16916 [poplar] [flax] ZT_dimer Dimerisation domain of Zinc Transporter
Representative CDS sequence Show only first row Show all	>Potri.001G010000.4 pacid=42791859 polypeptide=Potri.001G010000.4.p locus=Potri.001G010000 ID=Potri.001G010000.4.v4.1 annot-version=v4.1 ATGGAGGGGAATTCAGGTTCTGGCCCGAAAACACCATTGTTAATGGGTGAAGGAAGAAGAAGCAGGAGACTGAGTGGAAGGAATTCAGTGAACTCGCTGA GGTCTAATTTTGTGGCAAAATTGCCTGATAAGGTAAGATCTGGCCTGGATACTGAGTCCCCTTATCAGATCAATTTATCCAAAACAACAGGCTTAACAGA AGGGGAAAAGGAATATTATGAAAAGCAAATGGATACGCTGAAATCCTTTGAGGATGTTGATATTCTAATGGGAAATGACAACGACAATGAGGATGATGAT GAAGACCAAGCTCGACATGAAAAGGCTATGAAGATATCTAACTATGCAAACATAGTATTGCTGGCATTTAAGATATATGCTACTATAAAGACTGGATCTT TGGCCGTAGCAGCGTCGACGCTGGATTCTCTGCTTGATCTTATGGCTGGTGGCATTCTTTGGTTCACTCACTTGTCAATGAAAAAAATAAATATCTACAA GTATCCTATTGGAAAATTGAGGGTGCAGCCAGTGGGGATTGTTATCTTTGCTGCTATCATGGCTACACTTGGGTTTCAGATTTTGACAAAGGCCGTCGAA CAACTAATTCAACACAAACATACTGAGAAAATGTCTTCTAATCAGTTTTTGTGGTTATATGCAATAATGCTAAGTGCAACGGCAGTAAAGCTTGCCCTTT GGTTATACTGCAGAAGTTCAAGAAATGAGATTGTCCGTGCCTATGCAAAGGATCACTATTTCGATGTAGTAACGAATATAGTAGGATTGATTGCAGCTGT TCTTGGCAATAAGTTCTACTGGTGGATGGACCCTACAGGTGCCATCCTCCTTGCAGTTTACACAATTATAAATTGGTCTGGAACTGTTGTGGAAAACGCA GTTTCACTTGTTGGACAATCTGCACCTCATGAATTCCTGCAGAAGTTGACATATCTTGTCATCAGGCATCCTCTAGTCCAGCGCATCGAGATGATCCGAG CCTACACCTTTGGTGTTCTTTATTTTGTAGAGGTAGATATTGAACTCCCGGAAGAACTGCCACTAAAGGAAGCACATGTTATTGGTGAGACTTTGCAAAA TAAGATTGAGAAATTGACTGAGGTTGAGAGAGCTTTTGTTCATCTTGATTTTGAATGTGACCATAAACCAGAACATATAGTTCTACGCAAGCTGCCTGGC AATGATCCTTGA
AA sequence Show only first row Show all	>Potri.001G010000.4 pacid=42791859 polypeptide=Potri.001G010000.4.p locus=Potri.001G010000 ID=Potri.001G010000.4.v4.1 annot-version=v4.1 MEGNSGSGPKTPLLMGEGRRSRRLSGRNSVNSLRSNFVAKLPDKVRSGLDTESPYQINLSKTTGLTEGEKEYYEKQMDTLKSFEDVDILMGNDNDNEDDD EDQARHEKAMKISNYANIVLLAFKIYATIKTGSLAVAASTLDSLLDLMAGGILWFTHLSMKKINIYKYPIGKLRVQPVGIVIFAAIMATLGFQILTKAVE QLIQHKHTEKMSSNQFLWLYAIMLSATAVKLALWLYCRSSRNEIVRAYAKDHYFDVVTNIVGLIAAVLGNKFYWWMDPTGAILLAVYTIINWSGTVVENA VSLVGQSAPHEFLQKLTYLVIRHPLVQRIEMIRAYTFGVLYFVEVDIELPEELPLKEAHVIGETLQNKIEKLTEVERAFVHLDFECDHKPEHIVLRKLPG NDP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58060			Cation efflux family protein (...		Potri.001G010000 [exp]	0	1
AT3G58060			Cation efflux family protein (...		Potri.001G010200 [exp]	1.41	0.9120
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	7.74	0.7938
					Potri.018G096014 [exp]	7.87	0.8609
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	9.16	0.7863
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.008G101600 [exp]	10.00	0.8385	GA2.4
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043200 [exp]	15.19	0.8282	CBP60.11
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	17.49	0.7977
					Potri.010G223733 [exp]	18.33	0.8257
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	19.89	0.7910	CESA2.3
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	20.97	0.8183

Compare expression of checked genes

Potri.001G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.