Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58060 479 / 4e-169 Cation efflux family protein (.1) AT1G79520 307 / 1e-101 Cation efflux family protein (.1.2) AT1G16310 301 / 7e-99 Cation efflux family protein (.1) AT2G39450 265 / 2e-85 ATMTP11 Cation efflux family protein (.1) AT2G47830 44 / 0.0002 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215600 [exp] 610 / 0 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 529 / 0 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 523 / 0 AT3G58060 529 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 311 / 5e-103 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 310 / 7e-103 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 310 / 1e-102 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 309 / 2e-102 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 302 / 3e-99 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 295 / 5e-97 AT1G16310 521 / 0.0 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016239 [exp] 516 / 0 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 515 / 0 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 308 / 1e-100 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 304 / 2e-100 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 304 / 5e-100 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 299 / 2e-98 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10016242 [exp] 109 / 3e-29 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10029300 [exp] 64 / 1e-12 AT3G58060 61 / 3e-13 Cation efflux family protein (.1) Lus10000061 [exp] 56 / 7e-09 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10040922 [exp] 45 / 6e-05 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family PF16916 [poplar] [flax] ZT_dimer Dimerisation domain of Zinc Transporter
Representative CDS sequence Show only first row Show all	>Potri.001G010300.1 pacid=42793411 polypeptide=Potri.001G010300.1.p locus=Potri.001G010300 ID=Potri.001G010300.1.v4.1 annot-version=v4.1 ATGGAGGATAATACGGGTTGTTTGAGTCCTAATGAGCCATTGTTGAATGGTAACGAGAGGTGGAAAAATGATGGATTTAGTCGAGTTAATTCGTACAACT CACTCAGGACAGATTTTTTATCAAGATTGCCTCATAAGGTTCGCTCTGGTCTTGATGTTGAGTCTTCTTTTCATGTTGATATCTCTAAAACCAAAGGGCT TAGCCAAGAGGAAAAGGAGTACTATGAAAGACAATTCGCTACCTTAAAATCATTCGAGGAAGTTGATACTTTGATGGAAACTAATACAATGGATGAAGAA GATGACGAAGAACAAGTGGAAGCTGAAAAGGCTATGAAGATCTCTAACTATGCTAACGTTTTGCTTCTGGTGTTTAAGATTTATGCTACAATAAGGACTG GATCAATAGCCATTGCTGCCTCGACATTAGATTCTTTGCTTGACCTCTTGGCTGGTGGGATACTTTGGTTTACGCATATATCGATGAAAAACATAAATAT CTACAAGTATCCTATTGGAAAATTAAGGGTGCAGCCAGTGGGGATAATCATCTTTGCTGCTGTCATGGCTACACTTGGTTTTCAGATATTGATCCAAGCT CTTGAAGAACTTATTGTAAATGAATCACGTCCAAAGATGTCCTCAAATCAACTCTTATGGCTTTACATTATCATGATAACTGCTACTGTGGTGAAACTTG CACTTTGGATTTACTGTAGAAGCTCAGGAAACAGTATTGTTCGTGCCTATGCAAAGGATCACTATTTTGACGTGGTGACAAATGTGGTAGGATTAGTTGC AGCTGTTCTTGGGGATAAATATTACTGGTGGATTGACCCTACTGGTGCTATTCTTCTTGCACTATACACAATTACAAATTGGTCTGGGACTGTTATTGAA AATGCAGTTTCTCTTGTTGGGCAAACAGCATCTCCCGAAGTCTTGCAGAAATTGACGTATCTTGTCACAAGGCACCCTCAGGTCAAGCGTGTAGACACAG TCCGTGCTTATACATTTGGTGCTCTTTATTTTGTAGAGGTTGACATTGAACTTCCAGAAGAGCTGCCTCTAAAGGAAGCACACACCATTGGAGAGACATT GCAGAACAAGATTGAGAAACTCCCAGAAGTTGAGCGGGCATTCGTTCATCTTGATTTTGAATGTGAACACAAACCAGAGCACTCTGTTCTCAGCAGGTTA CCCAACAGTTAG
AA sequence Show only first row Show all	>Potri.001G010300.1 pacid=42793411 polypeptide=Potri.001G010300.1.p locus=Potri.001G010300 ID=Potri.001G010300.1.v4.1 annot-version=v4.1 MEDNTGCLSPNEPLLNGNERWKNDGFSRVNSYNSLRTDFLSRLPHKVRSGLDVESSFHVDISKTKGLSQEEKEYYERQFATLKSFEEVDTLMETNTMDEE DDEEQVEAEKAMKISNYANVLLLVFKIYATIRTGSIAIAASTLDSLLDLLAGGILWFTHISMKNINIYKYPIGKLRVQPVGIIIFAAVMATLGFQILIQA LEELIVNESRPKMSSNQLLWLYIIMITATVVKLALWIYCRSSGNSIVRAYAKDHYFDVVTNVVGLVAAVLGDKYYWWIDPTGAILLALYTITNWSGTVIE NAVSLVGQTASPEVLQKLTYLVTRHPQVKRVDTVRAYTFGALYFVEVDIELPEELPLKEAHTIGETLQNKIEKLPEVERAFVHLDFECEHKPEHSVLSRL PNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Potri.014G116000 [exp]	3.46	0.8293
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G002950 [exp]	4.69	0.7999
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.019G044000 [exp]	15.68	0.8434
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.008G011541 [exp]	16.43	0.8427
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.005G232300 [exp]	24.00	0.7585
AT5G36130			Cytochrome P450 superfamily pr...		Potri.011G001350 [exp]	26.45	0.7830
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082700 [exp]	27.05	0.7728
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	29.73	0.7692
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	30.01	0.7742
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061600 [exp]	32.18	0.7674

Compare expression of checked genes

Potri.001G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.