Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10620 695 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G57180 404 / 6e-133 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 92 / 3e-19 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044700 [exp] 406 / 2e-133 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 97 / 6e-21 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035986 [exp] 763 / 0 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 525 / 0 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031030 [exp] 409 / 3e-135 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 395 / 3e-135 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 408 / 1e-134 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031160 [exp] 87 / 1e-17 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 74 / 2e-13 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.001G010400.2 pacid=42789677 polypeptide=Potri.001G010400.2.p locus=Potri.001G010400 ID=Potri.001G010400.2.v4.1 annot-version=v4.1 ATGATCATAGCTAGAAACCTCCCTGCTTCAAAAACAAAACTCAAGCCTCTCTTATCTCTCTCTTTTCTTGTTCAATCACCCTTAACACCATCAAAAACCC ATGATTCCTATTGTAATTTCTATCCGCAAAACCCTACAAAAACCAATTTCCTGTATTTTTTCTCTTCAAAACCCACCAATCCAAACCCACCAAAGCACCA AACTTTTCCTTCTTTGCATCTCACCAGAGATGGAAATTACGACGATGCAACACCTCCGGCCACCGTCTGCCCTGGCTGTGGGGTCCACATGCAATATACA AACCCAAAACACCCTGGTTTCTACAAAGAGCCATCAGTTAAAGACCCGGATTACAAGTCTGACGCCCACTTAGTACCCATTTCACTAGAGTCGGAGTTTC CAGGTTCCCTCAAGAGGGGTTTCTTTGTTGAACCTGATAGCCAAAACCCAGATCTTGATTTGGCTGAAAATGAGTCAGTTTTGGGGAAAAGGCCTCCTGT AGTGTGTGCTAGGTGTCATTCTTTGAGACATTATGGGAAAGTTAAGGATCCAACCGTGGAGAATTTGTTGCCCGAGTTTGATTTTTATCATACAGTTGGT AGGCGTTTGGTTTCGAGTTCTGGAGCCAGGACTGTGGTTCTTTTGGTTGTTGATGCTGTGGATTTTGATGGGTCGTTTCCTAAAAAAGTAGCTAAGTTAG TTTCGGATTCGATTGAGGAAAATTTCACTGCTTGGAAAGAAGGGAAGTCGGGGAATGTAGCTAGGATTGTGCTTGTTGTGACTAAGATTGATTTGCTGCC TAGTTCATTGTCGCCTTTAGGATTTGAACAATGGGTTAGGCGAAGAGCAAGGGAAGGTGGTGCTAGTGTGATTAAGAAAGTGCATTTAGTGAGTTCGGTG AGGAATTGGGGATTGAAGAATTTGGCTGAGGATGTGATTGAATTGGCAGGGGCTAGAGGTCATGTGTGGGCTGTGGGGGCGCAGAATGCAGGGAAGAGTA CGTTGTTAAATGCAATGGCGAAGTGTGTTGGTGGAAATGAAAGGAAGGTTAGTTATTTGACGGAGGCTCCTGTGCCTGGTACGACGTTGGGGATTGTTAG GGTGGAAGGTGTTCTTCCAGGGCAGGCAAAGCTATTTGACACTCCAGGGCTTTTGAATCCACAGCAGATTACAACAAGGTTGAATAGGGAGGAGCAGAGG CTTGTGCATATCAGCAAGGAGTTGAAACCAAGGACTTACAGAATCAAGGAAGGTCATTCAGTTCATATTGGCGGGCTCATGAGACTGGATATTGTAGAAT TATCAGTAGATTCTCTATATGTCTCAGTGTGGGCATCTCCATATCTTCCGTTACATATGGGGAAAACGGAAAATGTAAGCACCATGGTAGAAGACCATTT CGGTCGTCAGTTACAGCCTCCAATTGGGGATAAGCGAGTTAAAGATCTTGGAAAATGGGTGAGACAGGAATTTCATGTCTCTGGGAACAGGTGGGACTCA AGTTCTGTAGATGTTGCTGCTGCTGGTCTTGGTTGGTTTGGTATTGGACTCAAAGGAGAGGCAATCTTGGGTGTTTGGACATATGAAGGAGTTGGTGTTG TTCTTCGTGATGCTTTGATTCCTTATAGAGCCCAGAGTTTTGAAGTAACAGGATTTACTGTGTCAAAAATTGTCTCAAAGGCTGACCAGGCTTTGAATAA ATCTCTGAGCCAAAGTGAAAAGAAGAGGAAACAAAGTAACCAAGAAGTAGCTGCATCAGCTGAATTATTAGTATCAGCAATTCATGAAGATGCAAATTCT TGCTAG
AA sequence Show only first row Show all	>Potri.001G010400.2 pacid=42789677 polypeptide=Potri.001G010400.2.p locus=Potri.001G010400 ID=Potri.001G010400.2.v4.1 annot-version=v4.1 MIIARNLPASKTKLKPLLSLSFLVQSPLTPSKTHDSYCNFYPQNPTKTNFLYFFSSKPTNPNPPKHQTFPSLHLTRDGNYDDATPPATVCPGCGVHMQYT NPKHPGFYKEPSVKDPDYKSDAHLVPISLESEFPGSLKRGFFVEPDSQNPDLDLAENESVLGKRPPVVCARCHSLRHYGKVKDPTVENLLPEFDFYHTVG RRLVSSSGARTVVLLVVDAVDFDGSFPKKVAKLVSDSIEENFTAWKEGKSGNVARIVLVVTKIDLLPSSLSPLGFEQWVRRRAREGGASVIKKVHLVSSV RNWGLKNLAEDVIELAGARGHVWAVGAQNAGKSTLLNAMAKCVGGNERKVSYLTEAPVPGTTLGIVRVEGVLPGQAKLFDTPGLLNPQQITTRLNREEQR LVHISKELKPRTYRIKEGHSVHIGGLMRLDIVELSVDSLYVSVWASPYLPLHMGKTENVSTMVEDHFGRQLQPPIGDKRVKDLGKWVRQEFHVSGNRWDS SSVDVAAAGLGWFGIGLKGEAILGVWTYEGVGVVLRDALIPYRAQSFEVTGFTVSKIVSKADQALNKSLSQSEKKRKQSNQEVAASAELLVSAIHEDANS C

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	0	1
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	1.73	0.9348
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	2.00	0.9515
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	3.74	0.9372
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	4.58	0.9243
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	5.83	0.9090
AT3G22440			FRIGIDA-like protein (.1)		Potri.018G078701 [exp]	6.32	0.9192
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	6.63	0.9323
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	8.83	0.9244
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	8.94	0.9059
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	9.16	0.9168

Compare expression of checked genes

Potri.001G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.