Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58040 456 / 2e-163 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 446 / 2e-159 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 424 / 1e-150 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 413 / 3e-146 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 338 / 5e-118 TRAF-like superfamily protein (.1) AT3G13672 246 / 4e-82 TRAF-like superfamily protein (.1.2) AT5G37870 107 / 3e-27 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 106 / 1e-26 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 97 / 5e-23 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 94 / 3e-22 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215400 [exp] 561 / 0 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 451 / 2e-161 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.016G059700 [exp] 450 / 4e-161 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.002G171500 [exp] 425 / 7e-151 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 424 / 2e-150 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 422 / 7e-150 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 420 / 2e-149 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 420 / 2e-149 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 419 / 3e-148 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013739 [exp] 496 / 2e-179 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 492 / 2e-177 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10002761 [exp] 419 / 4e-148 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 417 / 7e-148 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 415 / 9e-147 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 415 / 1e-146 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 416 / 2e-146 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 410 / 6e-145 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 61 / 6e-11 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 61 / 9e-11 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.001G010500.1 pacid=42788128 polypeptide=Potri.001G010500.1.p locus=Potri.001G010500 ID=Potri.001G010500.1.v4.1 annot-version=v4.1 ATGGCAACTTCTGCTGCTGAGTTAAGAGGCTCCCATTTCAGAAAAGCTGCAACCCCTAACACTGGAAATCTGGGAAAACAATCAACTAGTAACATGCAAG ACCTTCTTGACTGTCCTGTTTGCTTCACTATGATGTACCCTCCAATTTTCCAGTGTCCAAATGGCCACACTCTATGCTCACAATGCAGGGCCAGAGTAAA GAACTCTTGCCCAATTTGCCGAGGAGAGCTAGGAAATATAAGGTGCTTGGCTCTGGAAAAAATTGCTGAGTCAATAGAACTTCCTTGCATGTACCAAAGT GCGGGATGTGGTGACATATTTCCCTACTACAGCAAGCCAAAACATGAAGAGAACTGCAAATATCGTCCATACAACTGCCCTTATGCTGGAGCTGAATGTT CTGTCACTGGTGACATTTCACTTCTCATCAAGCATCTTAAGAATGATCATAAGGTTGATATGCATGATGGATGCACCTTCAATCACAGATATGTCAAGTC TGATGCCGGAGAAATCGACAATGCCACATGGATGTTAACTGTTTTTAATTGTTTTGGCCGACAGTTTTGCTTGCACTTTGAGACTTTTTTTATAGGAATG TCACCTGTTTACATGGCCTTCCTAAGATTCATGGGCACCGAAGACGAGGCAAGGGAATTCAGTTATAGTATTGAAGTTGGTGGTAATGGAAGAAAGCTTA CATGGCAAGGAGTTCCCAGAAGTATAAGGGATAGCCATCAGAAAGTTAGAGACAGCCAAGATGGACTGATCATTCAGAGAAACTTGGCACTTTTCTTCTC CGGAGGGGATCGGCAGGAGTTAAAACTGAAAGTTTCAGGACGGATTTGGAAAGAACAGTGA
AA sequence Show only first row Show all	>Potri.001G010500.1 pacid=42788128 polypeptide=Potri.001G010500.1.p locus=Potri.001G010500 ID=Potri.001G010500.1.v4.1 annot-version=v4.1 MATSAAELRGSHFRKAATPNTGNLGKQSTSNMQDLLDCPVCFTMMYPPIFQCPNGHTLCSQCRARVKNSCPICRGELGNIRCLALEKIAESIELPCMYQS AGCGDIFPYYSKPKHEENCKYRPYNCPYAGAECSVTGDISLLIKHLKNDHKVDMHDGCTFNHRYVKSDAGEIDNATWMLTVFNCFGRQFCLHFETFFIGM SPVYMAFLRFMGTEDEAREFSYSIEVGGNGRKLTWQGVPRSIRDSHQKVRDSQDGLIIQRNLALFFSGGDRQELKLKVSGRIWKEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.001G010500 [exp]	0	1
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	1.00	0.8438
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	3.60	0.7754	Pt-CEO1.1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	4.58	0.8195	ABF2.2
AT2G46690			SAUR-like auxin-responsive pro...		Potri.002G176400 [exp]	8.00	0.8197
AT4G21865			unknown protein		Potri.010G065666 [exp]	8.06	0.8074
AT2G31130			unknown protein		Potri.019G089900 [exp]	9.94	0.7755
AT5G58740			HSP20-like chaperones superfam...		Potri.009G046000 [exp]	13.11	0.7215
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	18.33	0.7815
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	19.89	0.8096	TGA3.1
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.014G028200 [exp]	20.12	0.7743	Pt-ABF2.1

Compare expression of checked genes

Potri.001G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.