Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45240 370 / 7e-128 ATSNAK2, GRIK1 geminivirus rep interacting kinase 1 (.1.2.3) AT5G60550 362 / 2e-124 ATSNAK1, GRIK2 geminivirus rep interacting kinase 2 (.1) AT3G01090 177 / 3e-51 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 166 / 1e-48 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G45820 164 / 3e-47 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G10930 164 / 6e-47 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G35410 164 / 7e-47 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G39440 164 / 1e-46 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT2G26980 160 / 3e-46 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G25110 162 / 4e-46 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215201 [exp] 561 / 0 AT5G60550 330 / 1e-110 geminivirus rep interacting kinase 2 (.1) Potri.009G012900 [exp] 369 / 1e-126 AT5G60550 535 / 0.0 geminivirus rep interacting kinase 2 (.1) Potri.004G115900 [exp] 171 / 3e-49 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 171 / 5e-49 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.010G002500 [exp] 166 / 6e-48 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.016G133500 [exp] 165 / 3e-47 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 162 / 3e-46 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G090800 [exp] 162 / 1e-45 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.006G263500 [exp] 158 / 1e-44 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041298 [exp] 366 / 6e-126 AT5G60550 532 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10037414 [exp] 363 / 1e-124 AT5G60550 533 / 0.0 geminivirus rep interacting kinase 2 (.1) Lus10012696 [exp] 170 / 2e-48 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10018334 [exp] 167 / 2e-48 AT3G17510 441 / 6e-153 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Lus10001290 [exp] 173 / 3e-48 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10019411 [exp] 167 / 3e-48 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10024075 [exp] 167 / 8e-48 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10007283 [exp] 166 / 2e-47 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10014163 [exp] 165 / 3e-47 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 162 / 3e-46 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G010700.2 pacid=42789351 polypeptide=Potri.001G010700.2.p locus=Potri.001G010700 ID=Potri.001G010700.2.v4.1 annot-version=v4.1 ATGGAAGAACAATCAATTCCTTGCACACCAAGGACGGCTCAAGCTTGTAAGAAGATTCCCGTTACAGTAATCACCTCTGTCAAGCATTCTAAGCATTCAA ATGGAAGAAAGATGATCAATGAGTATGTAAAAGAAAGGAAGATCAACCAAGGAAGCTATGGTAGAGTGGTTCTTTATCGAAACAGTAACGATGGAATCCC ATATGCTATTAAGGTTGTTTGTAAGTCTCGTTTGCGCAAGTTGCGCATCACACAATCAGAAACAGCCATGACTGATGTTCTCAGAGAAGTTTCCATATTG AAAACATTGGAACATCCAAACATAATCAACCTAGTTGAGGTGATTGATGACCAAAAATCTGATTATATGTATATGGTTCTTGAATACGTGGAAAGCAGTT GTATGAGCAACATTTCGGAGACGAAAGGACAGATTGATGAAACAACTGCAAGAAGATATTTCAAGGATGTAATTGCCGGTCTCATTTATTTGCATCACCA TAACATCGTGCATGGTGATATTAAGCCAGAAAATCTTTTGGTCACTACAAGTGGAAGGGTGAAGATAGTTGATTTCAGCTTTGGCCATGCCTTTGAGGAT GGCAATGATGGGCTATTGAGATGTCCTGGAACTCCAGCTTTCACAGCACCTGAGTGTTGTTCAGATACAGTTTACCATGGGAAAGCTGCTGATACATGGG CTGTTGGTGTTACCTTATATTTTATGGTGGTGGGCTGCTGCCCTTTTCTTGCCGATAGTGCACCTGAAACTTATGACAAGATTGTTAATGGTCCCTTGTC ACTCCCAGAAGAATTAAATCCTGACCTCAAAGATCTGCTCCAAGGCCTTCTCTGTAAAGATCCAACCCAAAGAATTACGTTGAATAGTGCAGCTGAGCAT CCATGGATGGTCAAAGAGGGAGGTCCAGTCCCTATAAACTGCATTTAA
AA sequence Show only first row Show all	>Potri.001G010700.2 pacid=42789351 polypeptide=Potri.001G010700.2.p locus=Potri.001G010700 ID=Potri.001G010700.2.v4.1 annot-version=v4.1 MEEQSIPCTPRTAQACKKIPVTVITSVKHSKHSNGRKMINEYVKERKINQGSYGRVVLYRNSNDGIPYAIKVVCKSRLRKLRITQSETAMTDVLREVSIL KTLEHPNIINLVEVIDDQKSDYMYMVLEYVESSCMSNISETKGQIDETTARRYFKDVIAGLIYLHHHNIVHGDIKPENLLVTTSGRVKIVDFSFGHAFED GNDGLLRCPGTPAFTAPECCSDTVYHGKAADTWAVGVTLYFMVVGCCPFLADSAPETYDKIVNGPLSLPEELNPDLKDLLQGLLCKDPTQRITLNSAAEH PWMVKEGGPVPINCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45240		ATSNAK2, GRIK1	geminivirus rep interacting ki...		Potri.001G010700 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	2.00	0.8946
AT5G01720			RNI-like superfamily protein (...		Potri.016G128400 [exp]	2.23	0.8405
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Potri.006G046500 [exp]	2.44	0.8779
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	13.71	0.8552
AT3G14840			Leucine-rich repeat transmembr...		Potri.003G026150 [exp]	13.85	0.7927
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025800 [exp]	15.49	0.8249
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	16.94	0.8239
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	16.97	0.8113
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	20.00	0.8185
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	21.16	0.8236

Compare expression of checked genes

Potri.001G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.