Plant FIBer expression Database

FTHFS1,Pt-THFS.2 (Potri.001G010800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol FTHFS1,Pt-THFS.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50480 1123 / 0 THFS 10-formyltetrahydrofolate synthetase (.1)
AT2G12280 144 / 7e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT2G12200 95 / 8e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G215100
[exp]
1174 / 0 AT1G50480 1087 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013741
[exp]
1112 / 0 AT1G50480 1151 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Lus10039200
[exp]
1096 / 0 AT1G50480 1137 / 0.0 10-formyltetrahydrofolate synthetase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01268 FTHFS Formate--tetrahydrofolate ligase
Representative CDS sequence
>Potri.001G010800.1 pacid=42788485 polypeptide=Potri.001G010800.1.p locus=Potri.001G010800 ID=Potri.001G010800.1.v4.1 annot-version=v4.1
ATGAGTGCATCAAAAACGTTGAGGAAGTTGGAGGTGGTGTCACCAGTACCAGCTGACATAGACATTGCTAACTCAGTGGAACCTTTTCACATATCTGAGA
TTGCTAAAGAGCTGAATCTTAGCCCTAAACATTATGATCTTTATGGAAAATACAAGGCCAAGGTATTATTGCCTGTGCTTGATGAGCTTGAAGGATCAGG
AGATGGGTACTATGTGGTGGTTGGAGGGATTACTCCTACACCACTTGGAGAAGGAAAGTCCACTACTACTGTTGGCCTCTGTCAGGCTATGGGTGCATTT
CTTGATAAAAAGGTTGCTACCTGCCTTCGTCAACCATCACAAGGACCGACTTTTGGAATAAAAGGGGGTGCAGCTGGTGGTGGTTATAGTCAAGTTATTC
CAATGGATGAATTCAATCTTCACCTAACAGGAGATATTCATGCAATAACAGCTGCAAATAATCTCCTAGCAGCTGCTATTGATACCCGGATTTTCCATGA
GTCTACACAATCAGACAAGGCTCTTTTAAACCGCTTATGCCCACCGAACAAAGAAGGAAAACGAAGCTTTAGTGACATAATGTTTCGGCGTCTGAAGAGG
CTTGGTATCTCCAAGACCAAGCCTGAGGAACTCACACCACAAGAAGTAAAAAAATTTGCAAGGCTTGATATTGACCCAGCTTCGATAACATGGAGGAGAG
TAATGGATGTCAATGACAGGTTTTTGAGAAAGATTACTGTTGGACAAGGTCCTGAAGAAAAAGGGATGGTGAGAGAAACAGGATTTGATATATCTGTAGC
TAGTGAGATAATGGCAGTTTTGGCCCTCACAACATCTCTAGCTGATATGAGAGAGAGGCTTGGTAAAATGGTGATTGGCAATAGCAAGGCCGGGGACCCT
GTGACAGCTGATGATCTTGGTGTTGGAGGTGCCTTGACTGTACTGATGAAGGATGCTATCAACCCTACTTTAATGCAGACTCTTGAAGGAACTCCTGTTC
TTGTTCATGCTGGTCCTTTTGCGAACATTGCTCATGGAAATTCTTCCATCGTGGCCGATAAGATTGCACTGAAGCTGGTGGGACCGGGTGGGTTTGTGGT
CACAGAAGCAGGTTTTGGTTCTGATATTGGAACTGAAAAGTTCATGAACATAAAGTGCCGATACAGCGGTTTGACTCCTCAGTGTGCTGTTATTGTTGCA
ACAATTAGGGCCCTGAAAATGCATGGTGGTGGGCCAGAAGTGGTTGCTGGGAAGCCTCTTGACCGTGCCTACACAACTGAGAATGTGTCTTTGGTTGAAG
CCGGTTGTGTGAATTTAGCTAGGCATATTTCTAACACCAAGGCTTATGGTGTAAATGTTGTTGTTGCTGTGAACATGTTTGCAACTGATTCAGAAGCAGA
ACTTAATGCTGTCAGAAATGCAGCTTTGACTGCTGGGGCATATGATGCTGTTGTCTGTACACACCATGCTCATGGTGGGAAAGGAGCAGTGGAACTTGGA
ATTGCAGTTCAAAAGGCATGTGGGAATGTGACACAGCCATTAAAGTTTTTATATTCCTTGGACATTAGTATTAAAGAGAAAATAGAGGCAATAGCAAGGT
CATATGGTGCTAGTGGTGTCGAATACTCAGAGCAGGCTGAGAAACAAATTGAGATGTACAGCAGGCAAGGGTTCTCTGGTCTGCCGATCTGCATGGCTAA
AACCCAGTATTCATTTTCACACCAAGCGTCTGAGAAAGGAGCCCCCACTGGATTTGTTTTGCCAATAAGAGATGTCAGGGCTAGCATCGGTGCTGGTTTC
ATCTATCCTTTGGTTGGGACTATGAGTACCATGCCAGGACTTCCAACAAGGCCTTGCTTTTATGACATTGATCTGGACACTGCCACCGGCAAGGTTATTG
GTCTCTCTTAA
AA sequence
>Potri.001G010800.1 pacid=42788485 polypeptide=Potri.001G010800.1.p locus=Potri.001G010800 ID=Potri.001G010800.1.v4.1 annot-version=v4.1
MSASKTLRKLEVVSPVPADIDIANSVEPFHISEIAKELNLSPKHYDLYGKYKAKVLLPVLDELEGSGDGYYVVVGGITPTPLGEGKSTTTVGLCQAMGAF
LDKKVATCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALLNRLCPPNKEGKRSFSDIMFRRLKR
LGISKTKPEELTPQEVKKFARLDIDPASITWRRVMDVNDRFLRKITVGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP
VTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAVIVA
TIRALKMHGGGPEVVAGKPLDRAYTTENVSLVEAGCVNLARHISNTKAYGVNVVVAVNMFATDSEAELNAVRNAALTAGAYDAVVCTHHAHGGKGAVELG
IAVQKACGNVTQPLKFLYSLDISIKEKIEAIARSYGASGVEYSEQAEKQIEMYSRQGFSGLPICMAKTQYSFSHQASEKGAPTGFVLPIRDVRASIGAGF
IYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50480 THFS 10-formyltetrahydrofolate synt... Potri.001G010800
[exp]
0 1 FTHFS1,Pt-THFS.2
AT2G45990 unknown protein Potri.014G086100
[exp]
1.73 0.9321
AT1G08465 YABBY YAB2 YABBY2, Plant-specific transcr... Potri.016G067300
[exp]
8.48 0.9250
AT4G03260 Outer arm dynein light chain 1... Potri.019G119300
[exp]
9.16 0.9022
AT5G54290 CcdA cytochrome c biogenesis protei... Potri.001G406700
[exp]
12.80 0.9225
AT1G12800 Nucleic acid-binding, OB-fold-... Potri.003G124200
[exp]
17.49 0.9236
AT2G20340 Pyridoxal phosphate (PLP)-depe... Potri.002G255600
[exp]
22.11 0.8611
AT2G46320 Mitochondrial substrate carrie... Potri.002G167700
[exp]
24.55 0.9099
AT2G17390 AKR2B ankyrin repeat-containing 2B (... Potri.004G210000
[exp]
28.39 0.8985 Pt-AKR2.1
AT3G56010 unknown protein Potri.008G070700
[exp]
29.66 0.9073
AT4G08920 OOP2, HY4, BLU1... OUT OF PHASE 2, ELONGATED HYPO... Potri.005G164700
[exp]
30.00 0.9132 CRY1.1

Potri.001G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.