Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06700 471 / 1e-160 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 457 / 5e-156 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G49340 399 / 9e-135 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT1G60790 392 / 9e-131 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G20590 358 / 2e-118 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 340 / 1e-111 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 295 / 5e-94 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 292 / 7e-93 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 263 / 6e-83 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT5G06230 262 / 2e-82 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193900 [exp] 479 / 1e-163 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 478 / 5e-163 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 400 / 8e-135 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 400 / 9e-135 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 398 / 8e-133 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 366 / 4e-121 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 360 / 8e-119 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 354 / 1e-115 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 287 / 5e-91 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021066 [exp] 452 / 6e-153 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 399 / 3e-133 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 382 / 4e-127 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 367 / 8e-122 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10011932 [exp] 359 / 6e-119 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 356 / 1e-117 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10004159 [exp] 341 / 2e-110 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 331 / 2e-107 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 289 / 7e-92 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10030900 [exp] 271 / 6e-88 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.001G010900.2 pacid=42792000 polypeptide=Potri.001G010900.2.p locus=Potri.001G010900 ID=Potri.001G010900.2.v4.1 annot-version=v4.1 ATGACAGATTCATCATTACCAATATCTTCAGCAAAACACCGTCTACTCACGAAATCTGCAGACACATCAAAGCCTAATTTCATTCCTTTCACAGGAAGAA AAAGTTTGTCATTTGCTTTTGGATTCACGTTTATCTTTATACCATCCACTTTTCTCTTGCTCTATATTCAATCATTTTCTGGCTATTCCTTCCCTTTTTC TTCCCTTATCTCTCACTTTCTCTCAAATTCTTCATCTCTTTCTCACCAACACCACACCCTTCTTCATGTTCCCAACGAATCTCCGTTAGCTGATGCTAAA TATGGGGTTCATTCTTTGTCTCAAGAATACAATCTCACGTCTGAAAAGAGCCCTTTATTAAGTGCTGGTTTAAATGACACTGTAGCACAACATGGGAAGG TGGATGCAGGAAATGATTCTCATGGTGAGGAGGAGCAGTATGCTTTGAAGAGAGAAAATGGGGATAAAAAAAGGGCTGTGGAGAAAGAGAGAGTTGAAAG CAATGTGCTGGCATTGGATTCAAAAGGGAGAGATAGGAACACGAAAATTGAGAAATGGGTGAGGAAAATGGAGCAGTGCAATTGGTTTGATGGGAAATGG GGGAAGGATGATTCTTACCCTATATTTGCACCAGGATCTTGTCCTCATATTGATGAACCTTTCAATTGTTTTATTAATGGAAGGCTTGATAGTGAGTATC AAAAATATAGATGGCAACCAAGGCATTGCAATATCCCGAGGATGAATGGTAAGATTATGTTGGAGATGTTAAGAGGGAAGAGATTAGTCTTTGTCGGTGA TTCTCTCAATAGGAACATGTGGGAATCTCTGGTTTGTATTCTTCGAAATTCGGTGGAAGACAAGTCTAAAGTATTCGAAGCCTCTGGCAGAGAAGAATTT CGATCGGAGAGTTCTTACTCTTTCATATTCGAAGATTACAATTCCTCGGTGGAATTCTTTCAATCACCATTTCTTGTTCAAGAATGGGAAATGGAAGGTA AAAATGGATCAAAGAAGGAAACTCTCCGCCTTGATATGCTTGAGAGATCATCCGACAATTACAAAACTGCAGATGTTCTGATATTCAACTCTGGACATTG GTGGACTCATGAGAAAACTTTGGACGGGAGGGGTTACTATCAAGAAGGTAGCCATGTCTACAGTCAACTGAATGTCGACAAGGCATTTCGGAAAGCTTTG AGAACATGGGCTAGATGGGTGGAAACAAAGACGGATCCGTTCAAGACCCTTGTTTTCTTCAGGGGATATTCTGTTTCTCATTTTAGAGGTGGAGAGTGGG ATTCTGGTGGGAAATGTGACAGTGAGACCAAGCCGCTTATGGAGGAGACTTATTTTGAAGAAGATCCCCCAATGGTGAAGATTCTGGAATCGACACTCAA GCGTATGAAGACACCAGTATTCTATCTAAACGTTACAAGAATGACTAATTTCCGGAGGGACGCACATCCTTCAGTATATAGGGAGCAAAATATGACTGAA GAGGGGAGGTCATTGTCGAGAGTCCAAGATTGCAGTCATTGGTGTCTCCCTGGGGTTCCTGATACATGGAATGAGATCGTGTACAGTCATTTGCTCTTCA AACATAAGCAGAAGGAACTAAAGCAGCAGCAGCAGCGTCTGGTACACAATTCAATGAGACTCCATTAA
AA sequence Show only first row Show all	>Potri.001G010900.2 pacid=42792000 polypeptide=Potri.001G010900.2.p locus=Potri.001G010900 ID=Potri.001G010900.2.v4.1 annot-version=v4.1 MTDSSLPISSAKHRLLTKSADTSKPNFIPFTGRKSLSFAFGFTFIFIPSTFLLLYIQSFSGYSFPFSSLISHFLSNSSSLSHQHHTLLHVPNESPLADAK YGVHSLSQEYNLTSEKSPLLSAGLNDTVAQHGKVDAGNDSHGEEEQYALKRENGDKKRAVEKERVESNVLALDSKGRDRNTKIEKWVRKMEQCNWFDGKW GKDDSYPIFAPGSCPHIDEPFNCFINGRLDSEYQKYRWQPRHCNIPRMNGKIMLEMLRGKRLVFVGDSLNRNMWESLVCILRNSVEDKSKVFEASGREEF RSESSYSFIFEDYNSSVEFFQSPFLVQEWEMEGKNGSKKETLRLDMLERSSDNYKTADVLIFNSGHWWTHEKTLDGRGYYQEGSHVYSQLNVDKAFRKAL RTWARWVETKTDPFKTLVFFRGYSVSHFRGGEWDSGGKCDSETKPLMEETYFEEDPPMVKILESTLKRMKTPVFYLNVTRMTNFRRDAHPSVYREQNMTE EGRSLSRVQDCSHWCLPGVPDTWNEIVYSHLLFKHKQKELKQQQQRLVHNSMRLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.001G010900 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G200001 [exp]	7.93	0.7366
AT1G59530	bZIP	ATBZIP4	basic leucine-zipper 4 (.1)		Potri.002G115900 [exp]	10.24	0.7862
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	13.19	0.7796
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	26.00	0.7577
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	28.37	0.7414
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	28.77	0.7456
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067900 [exp]	30.24	0.7531	Pt-ACTI.1
AT5G66900			Disease resistance protein (CC...		Potri.007G039300 [exp]	31.08	0.7153
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076700 [exp]	32.83	0.7004
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Potri.001G220800 [exp]	35.07	0.7145

Compare expression of checked genes

Potri.001G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.