Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49120 407 / 1e-142 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT4G08780 402 / 2e-140 Peroxidase superfamily protein (.1) AT3G49110 399 / 2e-139 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 395 / 5e-138 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT3G32980 395 / 6e-138 Peroxidase superfamily protein (.1) AT5G06720 389 / 7e-136 ATPA2 peroxidase 2 (.1) AT2G38380 388 / 4e-135 Peroxidase superfamily protein (.1) AT5G06730 386 / 3e-134 Peroxidase superfamily protein (.1) AT2G38390 376 / 2e-130 Peroxidase superfamily protein (.1) AT5G19890 318 / 8e-108 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011300 [exp] 661 / 0 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011200 [exp] 649 / 0 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 628 / 0 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 617 / 0 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 530 / 0 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 484 / 6e-173 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 478 / 1e-170 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G215001 [exp] 460 / 2e-163 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.016G058200 [exp] 383 / 3e-133 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008173 [exp] 432 / 3e-152 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027984 [exp] 429 / 3e-151 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 421 / 5e-148 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 412 / 4e-144 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 404 / 5e-141 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10008168 [exp] 403 / 1e-140 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027983 [exp] 389 / 3e-135 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 380 / 4e-132 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025535 [exp] 323 / 7e-108 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 318 / 1e-107 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G011000.1 pacid=42789423 polypeptide=Potri.001G011000.1.p locus=Potri.001G011000 ID=Potri.001G011000.1.v4.1 annot-version=v4.1 ATGCATCTTTCTAAGGCTATAGTTGCAGCTTTTTTCTCTGTAGTTTTGCTTAGAGGAACATTGGCTTATGGCCAGCTTACTCCAACATTTTATGACCAGA CATGTCCAAATGTGAGCAGCATTATCCGTAATGTCATTACGGAGACATTGGTATCCGATCCTCGGATTGGAGCCAGCCTCATCAGGCTCCACTTCCATGA CTGCTTTGTTAATGGCTGTGATGGTTCGCTTTTGTTGGACAATACTGATACTATAGTGAGCGAAAAGGAAGCCGGAGGGAACAACAACTCTGCAAGAGGT TTTGAAGTTGTTGATACAATGAAGGCTTTGTTGGAGAGTGCCTGTCCTGCTACTGTTTCCTGTGCTGATATACTCACTATTGCAGCTGAAGAATCTGTTG TCTTGGCAGGAGGTCCAAATTGGACAGTTCCATTAGGAAGAAGAGATAGTACAACAGCAAGCCGAGATGCAGCAAATGCTTTCCTTCCGGCCCCTTCTCT CACCCTTGATCAACTCAGAGAGAGCTTCACTAATGTCAGCCTTAATAATAATAGTGATTTGGTAGCTCTATCTGGTGCTCACACATTTGGAAGGGCAAAA TGTTCTACGCTCGACTTCCGATTGTATGATTTCAACAGCACCGGTGCTCCTGACCCATCGTTGGACACAACTCTTCTAGCAGCTCTTCAGGAATTATGTC CTCCAGGTGGAAATAGGAGTGTGATAACAGATCTTGATCCCACAACACCTGATGTCTTTGACAGTAACTACTACTCCAATCTGCAAGGTAACCGAGGCCT GCTTCAGACTGATCAAGAACTGTTTTCAACTCCTGGGGCAGATGATGTCATTGCACTTGTTAACGCTTTCAGTGCTAATCAAACAGCTTTCTTTGAAAGC TTTGTGGAGTCCATGATAAGAATGGGAAATCTCAGCCCTCTGACGGGAACTGAAGGGGAGATCAGATTGAACTGCAGGGTAGTCAATGCAAACTTGGCTG GGCCAGATAGCATGCTTGTTAGCTCAATTTGA
AA sequence Show only first row Show all	>Potri.001G011000.1 pacid=42789423 polypeptide=Potri.001G011000.1.p locus=Potri.001G011000 ID=Potri.001G011000.1.v4.1 annot-version=v4.1 MHLSKAIVAAFFSVVLLRGTLAYGQLTPTFYDQTCPNVSSIIRNVITETLVSDPRIGASLIRLHFHDCFVNGCDGSLLLDNTDTIVSEKEAGGNNNSARG FEVVDTMKALLESACPATVSCADILTIAAEESVVLAGGPNWTVPLGRRDSTTASRDAANAFLPAPSLTLDQLRESFTNVSLNNNSDLVALSGAHTFGRAK CSTLDFRLYDFNSTGAPDPSLDTTLLAALQELCPPGGNRSVITDLDPTTPDVFDSNYYSNLQGNRGLLQTDQELFSTPGADDVIALVNAFSANQTAFFES FVESMIRMGNLSPLTGTEGEIRLNCRVVNANLAGPDSMLVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	0	1
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	1.41	0.9340
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	1.41	0.9359
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	2.00	0.8811	CHIA5.3
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	2.23	0.8706
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	2.44	0.9223
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.003G219300 [exp]	4.00	0.7588
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	4.24	0.8344
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	4.58	0.8097
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	4.89	0.8033
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011200 [exp]	9.38	0.7398

Compare expression of checked genes

Potri.001G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.