Plant FIBer expression Database

Potri.001G011401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G133550
[exp]
59 / 9e-12 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G011401.1 pacid=42791312 polypeptide=Potri.001G011401.1.p locus=Potri.001G011401 ID=Potri.001G011401.1.v4.1 annot-version=v4.1
ATGGACCACGTCTCCCAGCTGCTATCCCTCACCCCCAGTATGCACGAACGCTTGGCATTCTCTGGCAATAAAAGCCAGAGAAAAGGCCACGCAGGGGGGA
GGACAAACAACACAGGGGACCATAGACACTGGAAGATAGGCATAAACAGAGAGCACCAGAAGAACAAAGCGAGAGAGGAAACAAGAAAAGAAAAGAAAAG
AAAACAAGGAGATAAGAGACAGAACAGGAGGATGAAAACAGAAAGAAAAACAGAGGAACCAACCAAACGAAAGCACACCGTTGTCTTCAGCTTCGTTTCC
AAGCACCAAGGAAGCAGACAAACACAGAGGAGGAACAAGAATAGAGAATATACAGAAAGCAAAGAAAAAAAAAAGGAGAACGAAGAACAGAGAAGGAACA
GAAGAGAGGAATAG
AA sequence
>Potri.001G011401.1 pacid=42791312 polypeptide=Potri.001G011401.1.p locus=Potri.001G011401 ID=Potri.001G011401.1.v4.1 annot-version=v4.1
MDHVSQLLSLTPSMHERLAFSGNKSQRKGHAGGRTNNTGDHRHWKIGINREHQKNKAREETRKEKKRKQGDKRQNRRMKTERKTEEPTKRKHTVVFSFVS
KHQGSRQTQRRNKNREYTESKEKKKENEEQRRNRREE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G011401
[exp]
0 1
AT5G28040 GeBP DNA-binding storekeeper protei... Potri.001G261700
[exp]
6.85 0.7191
AT4G17080 Histone H3 K4-specific methylt... Potri.014G052300
[exp]
19.74 0.6875
AT5G28040 GeBP DNA-binding storekeeper protei... Potri.009G056400
[exp]
27.76 0.6921
AT1G03360 ATRRP4 ribosomal RNA processing 4 (.1... Potri.003G194400
[exp]
35.07 0.6695
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Potri.015G005500
[exp]
41.66 0.6867
AT3G51790 ATG1 transmembrane protein G1P-rela... Potri.003G205200
[exp]
42.13 0.6547
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.008G055200
[exp]
52.44 0.6770
Potri.004G232450
[exp]
57.62 0.6396
AT5G05480 Peptide-N4-(N-acetyl-beta-gluc... Potri.010G185100
[exp]
60.54 0.5946
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Potri.001G134800
[exp]
70.14 0.6604

Potri.001G011401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.