Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRX1.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 375 / 1e-130 ATPA2 peroxidase 2 (.1) AT5G19880 360 / 5e-125 Peroxidase superfamily protein (.1) AT5G06730 361 / 8e-125 Peroxidase superfamily protein (.1) AT2G38380 300 / 5e-101 Peroxidase superfamily protein (.1) AT2G38390 300 / 1e-100 Peroxidase superfamily protein (.1) AT3G32980 296 / 3e-99 Peroxidase superfamily protein (.1) AT2G18140 292 / 8e-98 Peroxidase superfamily protein (.1) AT3G49110 292 / 1e-97 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 290 / 3e-97 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G18150 290 / 7e-97 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058200 [exp] 370 / 1e-128 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214800 [exp] 364 / 4e-126 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 363 / 8e-126 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G215001 [exp] 342 / 1e-117 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G011200 [exp] 335 / 1e-114 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 333 / 6e-114 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.003G214900 [exp] 333 / 7e-114 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 327 / 1e-111 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 326 / 4e-111 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004163 [exp] 367 / 3e-127 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027984 [exp] 338 / 2e-115 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 337 / 6e-115 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008173 [exp] 335 / 2e-114 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008168 [exp] 323 / 8e-110 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008167 [exp] 322 / 6e-109 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 303 / 7e-102 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 295 / 8e-99 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10041784 [exp] 272 / 5e-90 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10034207 [exp] 264 / 7e-87 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G011500.1 pacid=42792578 polypeptide=Potri.001G011500.1.p locus=Potri.001G011500 ID=Potri.001G011500.1.v4.1 annot-version=v4.1 ATGTCTTCTGTTCTAGCTACAGTAATATGTGTAGTAATGTTGTTTTGGGGCATTTCTGATGCTCAATTAAGCCCCACGTTTTATGCTAGCACTTGCCCGA ATGTGTCGAGCATTGTGCGAGGTGTAGTGGAGCAAGCTGCGCGAAATGATGTCCGGCTTGGAGCCAAGCTCATTCGCATGCACTTCCATGATTGCTTTGT CGATGGCTGCGATGGCTCTATTCTGCTGGTCGATGCGAATGGCATAAATAGTGAGCAAGATGAACTCCCTAATCAATCCGTAGAAGGTTATGGTGTCGTT GATGACATTAAAACAGCAGTGGAGAATGTTTGTCCTGGCATCGTCTCCTGCGCAGATATATTAGCCCTTGCATCTGAAATATTGGTTACCTTGGCAGGAG GTCCAACATGGCAAGTGCCACTGGGAAGAAGGGATAGTACGACTGCAAACGCAGCAAGAACTTCTGACATTCCTAGTCCTTTCGAAACCTTTGAAAATCT TTCTCTCAAGTTCTCAAACAAGGAACTTGATTCCACTGATCTAGTTGCTTTATCTGGTGCACACACATTTGGGAGGTCTCAGTGCCAATTCTTCAGCCAG AGACTCAATGATACAAACCCTGATCCAACCTTAGACACAACATACTTGCAGACACTTCGCCAAGCATGCCCACAAGGCGGAAATCCAAGTAGATTGAACA ATCTTGATCCTACAACTCCTGATGATTTTGACAACAACTACTTCACAAATCTTCAGAACAATCGTGGCCTTCTCCAAACTGACCAAATACTCTTTTCTAC TAGCGGGGCTGATACTGTTGCCGTAGTCAACCGGTTTGCTAACAGCCAGACCGCCTTCTTTGATAGCTTTGCTCAGTCTATGATAAAGTTGGGAAATTTA AGTCCTTTGACAGGAAGCAATGGAGAAATCAGAGCCGACTGTAAGAGGGTCAATTAG
AA sequence Show only first row Show all	>Potri.001G011500.1 pacid=42792578 polypeptide=Potri.001G011500.1.p locus=Potri.001G011500 ID=Potri.001G011500.1.v4.1 annot-version=v4.1 MSSVLATVICVVMLFWGISDAQLSPTFYASTCPNVSSIVRGVVEQAARNDVRLGAKLIRMHFHDCFVDGCDGSILLVDANGINSEQDELPNQSVEGYGVV DDIKTAVENVCPGIVSCADILALASEILVTLAGGPTWQVPLGRRDSTTANAARTSDIPSPFETFENLSLKFSNKELDSTDLVALSGAHTFGRSQCQFFSQ RLNDTNPDPTLDTTYLQTLRQACPQGGNPSRLNNLDPTTPDDFDNNYFTNLQNNRGLLQTDQILFSTSGADTVAVVNRFANSQTAFFDSFAQSMIKLGNL SPLTGSNGEIRADCKRVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.001G011500 [exp]	0	1	PRX1.12
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	1.73	0.9660
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	2.82	0.9627
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	5.65	0.9522
AT2G44930			Plant protein of unknown funct...		Potri.012G011800 [exp]	7.74	0.9529
AT4G36550			ARM repeat superfamily protein...		Potri.005G228100 [exp]	8.00	0.9361
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.002G009000 [exp]	12.64	0.9089	HMGB901,Pt-HMGB3.2
					Potri.013G045410 [exp]	14.38	0.8969
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G151000 [exp]	15.19	0.9247
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	15.68	0.9447
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	16.70	0.9357

Compare expression of checked genes

Potri.001G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.