Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51110 533 / 0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 57 / 5e-09 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 52 / 2e-07 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 47 / 9e-06 plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G19940 44 / 8e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020700 [exp] 59 / 1e-09 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 52 / 1e-07 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 47 / 9e-06 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.004G003200 [exp] 45 / 6e-05 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012100 [exp] 556 / 0 AT1G51110 511 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10010444 [exp] 545 / 0 AT1G51110 490 / 2e-173 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020982 [exp] 56 / 1e-08 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10042448 [exp] 44 / 8e-05 AT5G19940 250 / 9e-84 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10026221 [exp] 43 / 0.0002 AT5G19940 276 / 4e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.001G011700.1 pacid=42793719 polypeptide=Potri.001G011700.1.p locus=Potri.001G011700 ID=Potri.001G011700.1.v4.1 annot-version=v4.1 ATGGCTCTAAAATTTCATGCTGCCATTCATTTAAGCTTGCAATTGAGCCCATCTCCTACATTATTTGCACCATCATTTTGTAAGCCTCAGAAACTCTTGA AATCATTAGTTAAAAAAACTCATGTTTGTCAATCCTCTCTTGTTGATGAACAGCAGCAGCAAATTTCATTCAATGAGCAAGAAAATCAGCTGATAAATGC CCTTGTTGGCATCCAAGGCAGAGGAAAATCAGCATCCCCCCAGCAACTCAATGAGGTCGGACATGCAGTTAAAGTTCTTGAAGGCTTAGAAGGAGTGTCT GAACCTACAGGCTCGAACTTGATCGAAGGTCGGTGGCAATTAATGTTTACGACTAGACCTGGGACAGCATCTCCAATTCAGAGAACATTTGTTGGTGTTG ACTTCTTCAGCGTATTTCAAGAGGTATACCTTCGGACAAATGATCCTCGTGTGTCCAACATTGTAAAATTCTCAAATGCTATAGGCGAGCTGAAAGTAGA GGCAGCAGCAACAATTGAAAATGGAAAGAGGATCCTTTTCCAGTTTGACAGAGCAGCCTTTTCTTTCAATTTTTTACCATTTAAGGTTCCATATCCAGTG CCATTTAGGCTTCTTGGTGATGAAGCAAAGGGCTGGCTGGACACCACATACTTGTCTCCATCTGGAAACCTTCGCATCTCGAGAGGAAATAAGGGCACCA CCTTTGTGCTCCAGAAGAAAACTGAACCTAGACAAAGATTGCTGTCAGCAATTTGGACAGGAACCGGAGTTCTAGAGGCAATCAATGAATTTATAAAGTT AAATCAGAATGTTGCTAAAGATGAAATGGAACTCATCGATGGAGAGTGGCAGATGATATGGAGTTCACAGATGGAGACAGATAGTTGGATAGAGAATGCT GGCAGAGGTCTAATGGGAAAGCAGATTGTCACAAAGAACGGACAGTTAAAGTTCGTCGTCGACATCTTGCTCGGTGTCAGGTTCTCCATGACAGGAACAT TTGTGAAATCAAGTCTCAATACATATGATGTTAAAATGGATGATGCAGCCATCATTGGTGGCATGTTTGGACTCCCTGTGGAGATGGAAACCAAGATTAA CCTAGAGTTGCTATATAGTGATGATAAAATCAGAATCAGTCGAGGGTACAAAAACATTGTGTTTGTGCATGCACGAACAGATGGAACAAGGCAGAATTAA
AA sequence Show only first row Show all	>Potri.001G011700.1 pacid=42793719 polypeptide=Potri.001G011700.1.p locus=Potri.001G011700 ID=Potri.001G011700.1.v4.1 annot-version=v4.1 MALKFHAAIHLSLQLSPSPTLFAPSFCKPQKLLKSLVKKTHVCQSSLVDEQQQQISFNEQENQLINALVGIQGRGKSASPQQLNEVGHAVKVLEGLEGVS EPTGSNLIEGRWQLMFTTRPGTASPIQRTFVGVDFFSVFQEVYLRTNDPRVSNIVKFSNAIGELKVEAAATIENGKRILFQFDRAAFSFNFLPFKVPYPV PFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQRLLSAIWTGTGVLEAINEFIKLNQNVAKDEMELIDGEWQMIWSSQMETDSWIENA GRGLMGKQIVTKNGQLKFVVDILLGVRFSMTGTFVKSSLNTYDVKMDDAAIIGGMFGLPVEMETKINLELLYSDDKIRISRGYKNIVFVHARTDGTRQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	0	1
AT4G13150			unknown protein		Potri.002G242800 [exp]	1.00	0.9848
					Potri.011G080900 [exp]	1.73	0.9821
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	2.00	0.9841
AT4G19985			Acyl-CoA N-acyltransferases (N...		Potri.019G065400 [exp]	4.47	0.9714
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.013G148900 [exp]	6.00	0.9772	Pt-PETC.2
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.014G106400 [exp]	6.32	0.9751	TMP14.2
AT1G18060			unknown protein		Potri.012G052300 [exp]	7.34	0.9748
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	8.48	0.9685	IM30.2
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	9.21	0.9661
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	9.38	0.9712

Compare expression of checked genes

Potri.001G011700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.