Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42340 74 / 2e-13 PUB15 Plant U-Box 15 (.1) AT1G68940 73 / 4e-13 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT5G01830 72 / 1e-12 ARM repeat superfamily protein (.1) AT1G29340 71 / 1e-12 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G76390 71 / 3e-12 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G23030 70 / 4e-12 PUB11 ARM repeat superfamily protein (.1) AT3G54850 69 / 9e-12 ATPUB14 plant U-box 14 (.1) AT1G20780 69 / 1e-11 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT4G21350 68 / 1e-11 PUB8, B80 plant U-box 8 (.1) AT1G71020 68 / 1e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214100 [exp] 1200 / 0 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.015G117300 [exp] 198 / 5e-53 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 196 / 2e-52 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 105 / 4e-23 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 103 / 2e-22 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 94 / 2e-19 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G165900 [exp] 76 / 8e-14 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.005G063700 [exp] 74 / 1e-13 AT1G49780 139 / 3e-37 plant U-box 26 (.1) Potri.002G009900 [exp] 74 / 3e-13 AT5G42340 763 / 0.0 Plant U-Box 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039197 [exp] 624 / 0 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 604 / 0 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10038340 [exp] 209 / 7e-57 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 206 / 1e-55 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017257 [exp] 100 / 4e-21 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 100 / 5e-21 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10034937 [exp] 97 / 2e-20 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 93 / 2e-19 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10025244 [exp] 74 / 3e-13 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10037970 [exp] 73 / 4e-13 AT3G54850 803 / 0.0 plant U-box 14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G012300.1 pacid=42792266 polypeptide=Potri.001G012300.1.p locus=Potri.001G012300 ID=Potri.001G012300.1.v4.1 annot-version=v4.1 ATGGCAACATCTTTGGAGGAGCTTCTTGCGAAGGAAGGGTTTAGAGCCGGAAGATCAGGGACAAGGGCAAGGCCTGCATTCAAAGGAGAAGCTGCAAGTA TGCCTCGTTACCCTTCTGGAGACCAAGGCAAAAAGGACTCTCCATCTGGTCCATCTATCAGTAGAATCAAGACTGAAAGGACAAGATCTGATGTCACTCG GTATACTTTGAGAGGAGAATCACCAGTAAGTAATAGTAGTTTAGGTTGGAGACCGAGGGATGATCTGGTTAGAAGAGAAAAAATAGATTCAAGATTGAAG ACAGAACTTCGCTGCAGAGGTTCGAAAGATGTGCAGGAAGATAAGACTCTGAATTCTGACACATTGGAAGATGTCAAGGGGAGTGAGATTGTTGAGGTTG GTGTGGAAGAAGATGGGAGATTTAAGGATATATACTCTGATAAAGCATATTATTCAGAAAGAAAGGAAAGATCATCAAAAGGTAACGGGAGCTCGGAGAG GTATAAAGAGAGGAAAGGGAAGGATAAGAAAGTAACTGAAAGGCGCGGCAGCAATTCTAATGAAAAATTGCTCAAATACACTGGACTGAGCAATAACAAC AGGAAAAGTATGGACCAGGTTGAGGCGGCTTATGAAAGTTCGGTTAGAGGCTCAAAGAATGCCAATGGCTTTGAAGATGATCAGAGAACAAAGAATGAGA AAAGTGCACCAGCAGTTCCTGAAATTGCTCTTGATGAAGTTGCTGTTAAAGCAGTAACCTCCATCTTAAATGGTTATATCAAGCGTTTTCTTAAAGATGC AAAATTCCGAACCACTCTCCGTCGCAATTGTTTCTCTTCTCTTGCTTTTATCGAAACAGAAGAAGGCGACAGCATTGAGAGCATGGCCAAGGCCAATCTT GAACAAGCTATTGCAACAGTGGAAAAGGTTTCCGAGGCAGCTGCAAGGGCAAACGATTTGAAAACAGCTGCTTTGCAGCTTAGTGTGATCACAGGCTTGA ACTCAAATGATCTGAAAGATGAATATACATCAGGAACTCCAAATTCTAGGTTGTCAGCTTGTGCTCACATCTATCTCAGTGTGATATATAAGCTACAAAA GAAGGACAAGGCTTCAGCTAAGCATCTTTTGCAAGTGTTCTGTGATTCTCCTTTTCTGGCAAGAACACTTTTGTTGTCTGAACTGTGGGACTATCTATTC TTCCCTCATCTTTCTCATTTGAAGACTTGGTACAAACAAGAGGCAGATGCTCTATTCAGGAAGCCAAGCAAGATTACGAAACTTAAGTTTCTTGCCAAAG TTTATAACGAAACTCTGGATTCCTGTACCTATCAATTTGCAGTTTACTACAAGGATTGGCTCACAGAGGGAGTTGAAGCTCCTTCTATTCCTTCTGTCGA CATCCCTTTCACGTCACAGCAGGGGGGTTCACGGGATCATTCTTCAGGACCAGCTAGTCCGTCTGCTCCTTTCTCACCCCAGCCAACGGTGAGTAAGAAA CTATATGATGCTGTATTTGGCCGTTCAAGTAAACCTAGAGTTCATGAGGCTGAAGACAATGGGAAGGCAGAAAACTTCAATAATGGTGCACATATTTCTG GTTCTTCTCCTATTGAAATCAAACATACAGTGACGATCTCTTTCAAAATGGTTACATATCCTGGTCAAGATATAGAGAACCATTCCCCTGAGAATGTACC AGATAACACCTCCATTCCTGGTAAAGGGCTCTTAACAGCATCTAACAAAGAATGGAAGTTGGTCAAAGTGAGTGTTTCACCAGGCACAGATCTTAATGCT GACACTTGCAACTCTAGTGCAAGGGAAGAACCTGAAGGAGATACTACTCATATGCTAAATTCATCTTCACATACAAAAGAAAACGAGCTAGCCCTCAAGA CACTAGCAAAATCTGTTTTCGAACTACAGCGAACTGAGGATTCTGGTGATCCCACTGTTTCAGACCTTTCACATTCCAAAAAGGCAATCAACGCGGACGC TTCTAGTGAAGGGCCAAATGGAAGTCATGAACATTTTGATGAAGGATCCATTTTTGATAGCATTCCACACGACTTTATTTGCCCTCTCACCGGACAGTTG TTTGAGGATCCGGTGACCCTGGAGACCGGCCAAACCTTTGAGCGAGAGGCCATCCGAGAATGGTTTGATCAGGGAAACAAAACATGCCCTGTATCAGGAA AAACTTTAGCATGTTCAACCGTGCCACTTACCAACTCTATTTTGAAGCTTGTCATCGATAGTTGGAAATTGGTGAAAGAATAA
AA sequence Show only first row Show all	>Potri.001G012300.1 pacid=42792266 polypeptide=Potri.001G012300.1.p locus=Potri.001G012300 ID=Potri.001G012300.1.v4.1 annot-version=v4.1 MATSLEELLAKEGFRAGRSGTRARPAFKGEAASMPRYPSGDQGKKDSPSGPSISRIKTERTRSDVTRYTLRGESPVSNSSLGWRPRDDLVRREKIDSRLK TELRCRGSKDVQEDKTLNSDTLEDVKGSEIVEVGVEEDGRFKDIYSDKAYYSERKERSSKGNGSSERYKERKGKDKKVTERRGSNSNEKLLKYTGLSNNN RKSMDQVEAAYESSVRGSKNANGFEDDQRTKNEKSAPAVPEIALDEVAVKAVTSILNGYIKRFLKDAKFRTTLRRNCFSSLAFIETEEGDSIESMAKANL EQAIATVEKVSEAAARANDLKTAALQLSVITGLNSNDLKDEYTSGTPNSRLSACAHIYLSVIYKLQKKDKASAKHLLQVFCDSPFLARTLLLSELWDYLF FPHLSHLKTWYKQEADALFRKPSKITKLKFLAKVYNETLDSCTYQFAVYYKDWLTEGVEAPSIPSVDIPFTSQQGGSRDHSSGPASPSAPFSPQPTVSKK LYDAVFGRSSKPRVHEAEDNGKAENFNNGAHISGSSPIEIKHTVTISFKMVTYPGQDIENHSPENVPDNTSIPGKGLLTASNKEWKLVKVSVSPGTDLNA DTCNSSAREEPEGDTTHMLNSSSHTKENELALKTLAKSVFELQRTEDSGDPTVSDLSHSKKAINADASSEGPNGSHEHFDEGSIFDSIPHDFICPLTGQL FEDPVTLETGQTFEREAIREWFDQGNKTCPVSGKTLACSTVPLTNSILKLVIDSWKLVKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	0	1
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.001G407000 [exp]	10.09	0.7021
AT3G54800			Pleckstrin homology (PH) and l...		Potri.008G038800 [exp]	11.83	0.7369
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	13.41	0.7407
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	15.16	0.7240	Pt-HB1.8
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	15.49	0.7368
					Potri.010G144000 [exp]	15.65	0.6753
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	16.61	0.7889
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	16.97	0.7807
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	18.70	0.7356	CLE12.1
					Potri.010G031700 [exp]	20.34	0.7617

Compare expression of checked genes

Potri.001G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.