Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 571 / 0 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 219 / 3e-67 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G11170 215 / 5e-65 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 207 / 7e-62 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT4G30950 89 / 6e-19 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012700 [exp] 637 / 0 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 604 / 0 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 588 / 0 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 585 / 0 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 221 / 5e-68 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G101500 [exp] 216 / 3e-65 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 214 / 1e-64 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 213 / 6e-64 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 212 / 6e-64 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004175 [exp] 612 / 0 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 612 / 0 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 538 / 0 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 536 / 0 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 525 / 0 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 505 / 3e-179 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 501 / 7e-178 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 498 / 2e-176 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 492 / 5e-174 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2) Lus10004180 [exp] 477 / 5e-168 AT3G12120 498 / 4e-177 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase PF11960 [poplar] [flax] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Potri.001G012401.1 pacid=42788094 polypeptide=Potri.001G012401.1.p locus=Potri.001G012401 ID=Potri.001G012401.1.v4.1 annot-version=v4.1 ATGGTGGCTTTTGTCAAGATTCTTCTACCCAGGCAAGGCAGCCCAAGCAAGCAGAGAGACATACAGCTTCAGAGAGAGAGAGAGAGAGCAGAGAGAGAGA GAGAGAGCACTTCTTTTGCAAGAAGGTGCCTTCTATATTCAGGGAAGCTGAACAGAGCAATGGCAGCCAATGGAGTGTTTGCCTCCAGTGGCAAGCATGG AGGAAAGGAAAGCCGCATCAAGAGAATGCCACATGGGAAGCCTCCGTTCACTCTTGGCAAAATCAAGAAGGCCATCCCGCCCCATTGCTTCGAACGATCC CTTCTCCGCTCATTCTCCTATGTGGTTTATGATCTGTGCATAAGCTTTCTCCTCTGCTACATTGCCATCACATACATCGACCTCCTCCCATCCCCGCTCT CCTGTGTTGCGTGGCCCATGTACTGGATTCTCCAAGGCAGCATTCTCACTGGTGTTTGGGTTATTTCTCATGAATGTGGTCACCATGCCTTCAGTGACTA CCGGTGGCTTGATGACACAGTTGGCTTAATCCTCCATTCTGCACTTTTAGTCCCTTACTTTTCCTGGAAATACAGCCACCGCCGCCATCACTCAAACACA GGGTCCCTTGAGCGCGACGAAGTGTTCGTTCCAAAGCCTAAGTCTCGAATCGCATGGTATTCCAAGTACCTAAACAACCCACCAGGCCGAGCTTTAAGTC TTGTTGTCACACTTCTGCTAGGCTGGCCCTTATACCTAGCCTTCAACGTTTCAGGCCGACCCTATGATCGCTTTGCCTGTCACTATGATCCCTATGGCCC CATATATTCTGATCGTGAAAGGCTTCAGATTTACATTTCTGATCTTGGCATTTTTGCTGCAACTTTTGTGCTCTACAGCATCGCTGTATCTCGAGGGCTG GCATTTCTGATATGCATTTATGGGGTACCGTTACTTATTGCTAATGGTTTCCTTGTCACCATCACATACTTGCAGCACACTCACCCTGCATTGCCACATT ATGATTCCTCTGAATGGGAGTGGCTTAGAGGAGCTTTGGCAACCATGGATAGAGACTATGGGATCCTGAACAAGGTCTTCCATAACATTACAGACACGCA TGTAGCTCACCATCTCTTCTCTAACATGCCACATTATCATGCAATGGAGGCTACGAAAGCAATCAAGCCAATACTGGGTGAGTTCTATCAGTTTGATGAT ACTCCAATTTACAAGGCCTTATGGAGGGAGACAAAAGAATGCCTGTATGTTGATCCAGATGACGGAGCTCCTGAAAAAGGCGTGTTCTGGTACCGGAACA AGTTTTGA
AA sequence Show only first row Show all	>Potri.001G012401.1 pacid=42788094 polypeptide=Potri.001G012401.1.p locus=Potri.001G012401 ID=Potri.001G012401.1.v4.1 annot-version=v4.1 MVAFVKILLPRQGSPSKQRDIQLQRERERAERERESTSFARRCLLYSGKLNRAMAANGVFASSGKHGGKESRIKRMPHGKPPFTLGKIKKAIPPHCFERS LLRSFSYVVYDLCISFLLCYIAITYIDLLPSPLSCVAWPMYWILQGSILTGVWVISHECGHHAFSDYRWLDDTVGLILHSALLVPYFSWKYSHRRHHSNT GSLERDEVFVPKPKSRIAWYSKYLNNPPGRALSLVVTLLLGWPLYLAFNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDLGIFAATFVLYSIAVSRGL AFLICIYGVPLLIANGFLVTITYLQHTHPALPHYDSSEWEWLRGALATMDRDYGILNKVFHNITDTHVAHHLFSNMPHYHAMEATKAIKPILGEFYQFDD TPIYKALWRETKECLYVDPDDGAPEKGVFWYRNKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012401 [exp]	0	1
AT3G52360			unknown protein		Potri.006G200000 [exp]	13.15	0.7897
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152000 [exp]	21.49	0.8702
AT1G28650			GDSL-like Lipase/Acylhydrolase...		Potri.001G463900 [exp]	25.19	0.8216
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010500 [exp]	27.33	0.8646
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.003G124500 [exp]	40.54	0.8561
AT3G54200			Late embryogenesis abundant (L...		Potri.006G112800 [exp]	41.15	0.8557
AT4G14930			Survival protein SurE-like pho...		Potri.010G088100 [exp]	46.30	0.8543
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	49.29	0.8531	CHSL2
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023000 [exp]	51.57	0.8531
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	54.49	0.8521

Compare expression of checked genes

Potri.001G012401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.