Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16610 41 / 5e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 39 / 0.0004 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G37430 39 / 0.0004 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G10470 39 / 0.0005 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G60580 38 / 0.0007 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G17180 38 / 0.0008 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G03510 38 / 0.0008 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168900 [exp] 41 / 7e-05 AT2G28200 64 / 2e-11 C2H2-type zinc finger family protein (.1) Potri.009G037100 [exp] 40 / 8e-05 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 40 / 0.0002 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.014G066100 [exp] 39 / 0.0003 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 39 / 0.0005 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.017G116300 [exp] 38 / 0.0007 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G004800 [exp] 38 / 0.0007 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.002G143800 [exp] 38 / 0.0007 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 38 / 0.0008 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022610 [exp] 40 / 0.0002 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10022204 [exp] 37 / 0.0007 AT3G09290 67 / 2e-15 telomerase activator1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G012601.1 pacid=42791889 polypeptide=Potri.001G012601.1.p locus=Potri.001G012601 ID=Potri.001G012601.1.v4.1 annot-version=v4.1 ATGCCTAAATATCTTTCACTGTCTCTAGGCTTGATGAATACCTCCCTGTCGTCAAAAGCTCAAGAAATCCAACTCCCTGATGCCCATCATTTGCAACCAA AACAAGAATTATTAGGTAGCACAACCTTGTCAAGCCATTTTAAAAGTCCTCTCAGGAGAACTCCAAGGTCTCTATCAATAGCCCAAACAAGTCGTGCTCA TAAGCATAAATGCTTTATCTGCAAAGCATCTTTTATAAATGGAAACGCTTTGGGTGGGCATATGAGTTATCACGCTAAGAAGAGGAAGATTGAAGCATCG CGGCGCGGCCAGTTTTTCGAGTCAGGTACTGCTTCAGGATTCGGAGACTCGTCACCAGGCTCTCAAGATGGCTCAGATAAGTTTTGA
AA sequence Show only first row Show all	>Potri.001G012601.1 pacid=42791889 polypeptide=Potri.001G012601.1.p locus=Potri.001G012601 ID=Potri.001G012601.1.v4.1 annot-version=v4.1 MPKYLSLSLGLMNTSLSSKAQEIQLPDAHHLQPKQELLGSTTLSSHFKSPLRRTPRSLSIAQTSRAHKHKCFICKASFINGNALGGHMSYHAKKRKIEAS RRGQFFESGTASGFGDSSPGSQDGSDKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G012601 [exp]	0	1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	26.94	0.7811
					Potri.007G088800 [exp]	30.59	0.7649
AT1G17200			Uncharacterised protein family...		Potri.011G140200 [exp]	34.42	0.7645
AT1G26090			P-loop containing nucleoside t...		Potri.008G115401 [exp]	35.87	0.7371
AT3G57450			unknown protein		Potri.012G032500 [exp]	38.06	0.7466
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172200 [exp]	40.49	0.7355
AT4G17616			Pentatricopeptide repeat (PPR)...		Potri.003G084400 [exp]	51.30	0.6792
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Potri.002G155000 [exp]	51.57	0.7227
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143250 [exp]	58.24	0.7100
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	61.29	0.7319

Compare expression of checked genes

Potri.001G012601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.