Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) AT3G49120 385 / 4e-134 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G49110 382 / 9e-133 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08780 382 / 1e-132 Peroxidase superfamily protein (.1) AT4G08770 382 / 1e-132 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G38380 382 / 2e-132 Peroxidase superfamily protein (.1) AT5G06720 380 / 5e-132 ATPA2 peroxidase 2 (.1) AT3G32980 380 / 7e-132 Peroxidase superfamily protein (.1) AT2G38390 368 / 4e-127 Peroxidase superfamily protein (.1) AT4G36430 308 / 5e-104 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011200 [exp] 609 / 0 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 608 / 0 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 604 / 0 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 599 / 0 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 503 / 1e-180 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 465 / 3e-165 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 463 / 9e-165 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G215001 [exp] 446 / 7e-158 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.016G058200 [exp] 368 / 2e-127 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008173 [exp] 415 / 2e-145 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027984 [exp] 414 / 6e-145 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 400 / 8e-140 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008168 [exp] 397 / 2e-138 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008167 [exp] 393 / 1e-136 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 386 / 3e-134 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 377 / 2e-130 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 361 / 1e-124 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 298 / 6e-100 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 300 / 6e-99 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G012901.1 pacid=42791875 polypeptide=Potri.001G012901.1.p locus=Potri.001G012901 ID=Potri.001G012901.1.v4.1 annot-version=v4.1 ATGCATCTTTCTAAGGCTATAGTTGCAGCTTTTTTCTTTGTAGTTTTGCTTGGAGGAACATTGGCTCATGGCCAGCTTACTCCAACATTTTATGACCGGA CATGTCCAAATGTGAGCAGCATTATCCGTAATGTCATTACGGAGACATTGGTATGCGATCGTCGGATTGGAGGCAGCCTCATCAGGCTCCACTTCCATGA CTGCTTTGTTAATGGCTGTGATGGTTCGCTTTTGTTGGACAATACTGATACTATAGAGAGCGAAAAGGAAGCCGCAGGGAACAACAATTCTGCAAGAGGT TTTGAAGTCGTTGATAGAATGAAGGCTTTGTTGGAGAGTGCCTGTCCTGCTACTGTTTCCTGTGCTGATATACTCACTATTGCAGCTGAAGAATCTGTTG TTTTGGCAGGAGGTCCAAATTGGACAGTTCCATTAGGAAGAAGAGATAGCACAACAGCAAGCCGAGCTGCAGCAAATGCTTCCCTTCCAGCCCCTTTTTT AACCCTTGATCAACTCAGAGAGAGCTTCACTAATGTCGGCCTTAATAATAATACTGATTTGGTAGCTCTATCTGGTGCTCACACATTTGGAAGGGCAAAA TGTTCTACATTCAACTTCCGATTGTATGATTTCAATGGCACCGGTGCTCCTGACCCAACATTGGACCCGCCTTTTCTAGCAGCTCTTCAGGAATTATGTC CCCAAGGTGGAAATGATAGTGTGATAACAGATCTTGATCTCACAACACCTGATGCCTTTGACAGTAACTACTACTCCAATCTGCAATGTAACCGAGGCCT GCTTCAGACTGATCAAGAACTGTTTTCAACTCCCGGGGCAGATGATGTCATTGCACTTGTTAACGCTTTCAGTGCTAATCAAACAGCTTTCTTTGAAAGC TTTGTGGAGTCCATGATAAGAATGGGAAATCTCAGCCCTCTGACGGGAACTGAAGGGGAGATCAGATTGAACTGCAGTGTAGTCAATGCAAACTTGGCTG GGCCAGATAGCATGCTTGTTAGCTCAATTTGA
AA sequence Show only first row Show all	>Potri.001G012901.1 pacid=42791875 polypeptide=Potri.001G012901.1.p locus=Potri.001G012901 ID=Potri.001G012901.1.v4.1 annot-version=v4.1 MHLSKAIVAAFFFVVLLGGTLAHGQLTPTFYDRTCPNVSSIIRNVITETLVCDRRIGGSLIRLHFHDCFVNGCDGSLLLDNTDTIESEKEAAGNNNSARG FEVVDRMKALLESACPATVSCADILTIAAEESVVLAGGPNWTVPLGRRDSTTASRAAANASLPAPFLTLDQLRESFTNVGLNNNTDLVALSGAHTFGRAK CSTFNFRLYDFNGTGAPDPTLDPPFLAALQELCPQGGNDSVITDLDLTTPDAFDSNYYSNLQCNRGLLQTDQELFSTPGADDVIALVNAFSANQTAFFES FVESMIRMGNLSPLTGTEGEIRLNCSVVNANLAGPDSMLVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	0	1
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	1.00	0.9510
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	1.41	0.9359
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	2.44	0.8718
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	4.47	0.8417	CHIA5.3
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	4.89	0.8269
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.002G083700 [exp]	5.47	0.7824	ENOD8.4
AT4G37530			Peroxidase superfamily protein...		Potri.001G329200 [exp]	5.65	0.8454
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	5.91	0.8178
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011200 [exp]	7.34	0.7733
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	7.93	0.7646

Compare expression of checked genes

Potri.001G012901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.