Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49110 407 / 2e-142 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT3G49120 407 / 2e-142 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT4G08770 400 / 7e-140 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 398 / 6e-139 Peroxidase superfamily protein (.1) AT3G32980 398 / 6e-139 Peroxidase superfamily protein (.1) AT2G38380 393 / 7e-137 Peroxidase superfamily protein (.1) AT5G06730 389 / 4e-135 Peroxidase superfamily protein (.1) AT5G06720 382 / 5e-133 ATPA2 peroxidase 2 (.1) AT2G38390 376 / 3e-130 Peroxidase superfamily protein (.1) AT4G36430 317 / 3e-107 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G012901 [exp] 636 / 0 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 625 / 0 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 617 / 0 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011200 [exp] 612 / 0 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 525 / 0 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 468 / 1e-166 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G215001 [exp] 464 / 3e-165 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.003G214800 [exp] 462 / 2e-164 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.016G058200 [exp] 387 / 5e-135 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008173 [exp] 443 / 2e-156 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10027984 [exp] 440 / 2e-155 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 424 / 5e-149 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 419 / 9e-147 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008168 [exp] 417 / 3e-146 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008174 [exp] 392 / 3e-136 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 386 / 4e-134 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 382 / 6e-133 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 318 / 2e-107 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 321 / 3e-107 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G013000.1 pacid=42790608 polypeptide=Potri.001G013000.1.p locus=Potri.001G013000 ID=Potri.001G013000.1.v4.1 annot-version=v4.1 ATGCATCTTTCTAAGGCTATAGTTGCAGCCTTTTTCTTTGTAGTTTTGCTTGGAGGAACATTGGCTCATGGCCAGCTTACTCCAACATTTTATGACGAGA CATGTCCAAATGTGAGCAGCATTATCCGTAATGTCATTACGGAGACAGTGGTATCCGATCGTCGGATTGGAGGCAGCCTCATCAGGCTCCACTTCCATGA CTGCTTTGTTAATGGCTGTGATGGTTCGCTTTTGTTGGACAATACTGATACTATAGAGAGCGAAAAGGAAGCTAATGGGAACAACAACTCTGCAAGAGGT TTTGAAGTTGTTGATAGAATGAAGGCTTTGTTGGAGAGTGCCTGTCCTACTACTGTTTCCTGTGCTGATATACTCGCTATTGCAGCTGAAGAATCCGTTT TTTTGGCAGGAGGTCCAAATTGGACAGTTCCATTAGGAAGAAGAGATAGTACAACAGCAAGCCGAGATGCAGCAAATGCTTTCCTTCCAGCCCCTTTTTT CACCCTTGATCAACTCAGAGAGAGCTTCACTAATGTCAGCCTTAATAATAATAGTGATTTGGTAGCTCTATCTGGTGCTCACACATTTGGGAGGGCACAA TGTTCTACATTCGTCTTCCGATTGTATGATTTCAATGACACCGGTGCTCCTGACTCAACAATTGACCCACCTTTTCTAGAAGCTCTTCAGAAATTATGTC CCGAAAATGGAAATGGGAGTGTGATAACAGATCTTGATGTCACAACAGCTGATGCCTTTGACAATAAGTACTACTCCAATCTGCAAGGTAAGCGAGGCCT GCTTCAGACTGATCAAGAACTGTTTTCAACTCCCGGGGCAGATGATGTCATTGCACTTGTTAACGCTTTCAGTGCTAATCAAACAGCTTTCTTTGAAAGC TTTGTGGAGTCCATGATAAGAATGGGAAATCTCAGCCCTCTGACAGGAACTGAAGGGGAGATCAGATTGAACTGCAGGGTAGTCAATGCAAACTTGGCTG GGCCAGATAGCATGCTTGTTAGCTCAATTTGA
AA sequence Show only first row Show all	>Potri.001G013000.1 pacid=42790608 polypeptide=Potri.001G013000.1.p locus=Potri.001G013000 ID=Potri.001G013000.1.v4.1 annot-version=v4.1 MHLSKAIVAAFFFVVLLGGTLAHGQLTPTFYDETCPNVSSIIRNVITETVVSDRRIGGSLIRLHFHDCFVNGCDGSLLLDNTDTIESEKEANGNNNSARG FEVVDRMKALLESACPTTVSCADILAIAAEESVFLAGGPNWTVPLGRRDSTTASRDAANAFLPAPFFTLDQLRESFTNVSLNNNSDLVALSGAHTFGRAQ CSTFVFRLYDFNDTGAPDSTIDPPFLEALQKLCPENGNGSVITDLDVTTADAFDNKYYSNLQGKRGLLQTDQELFSTPGADDVIALVNAFSANQTAFFES FVESMIRMGNLSPLTGTEGEIRLNCRVVNANLAGPDSMLVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	0	1
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	1.00	0.9510
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	2.44	0.9223
AT1G32928			unknown protein		Potri.011G151600 [exp]	2.64	0.8228
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	3.00	0.8671
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.008G166000 [exp]	4.47	0.8302
AT4G37530			Peroxidase superfamily protein...		Potri.001G329200 [exp]	5.29	0.8560
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	6.00	0.8263
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	8.36	0.8144	CHIA5.3
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118000 [exp]	9.38	0.8201
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180600 [exp]	10.72	0.7467	Pt-RCOMT1.7

Compare expression of checked genes

Potri.001G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.