Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06770 169 / 3e-51 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12130 164 / 5e-49 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 59 / 8e-10 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G25970 52 / 3e-07 KH domain-containing protein (.1) AT2G35430 49 / 9e-07 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G33680 44 / 0.0001 KH domain-containing protein (.1) AT1G32360 44 / 0.0001 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT3G12680 43 / 0.0002 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT1G68200 42 / 0.0003 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT4G10070 42 / 0.0005 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G213200 [exp] 533 / 0 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.016G046600 [exp] 345 / 2e-119 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 323 / 7e-111 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.009G130600 [exp] 61 / 2e-10 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 60 / 4e-10 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 58 / 1e-09 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.018G055300 [exp] 51 / 6e-07 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 48 / 6e-06 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.018G004000 [exp] 46 / 2e-05 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004183 [exp] 329 / 9e-112 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 325 / 2e-111 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 277 / 7e-93 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 166 / 4e-51 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 70 / 3e-15 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10043287 [exp] 58 / 2e-09 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 57 / 3e-09 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10012015 [exp] 52 / 6e-09 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10020998 [exp] 56 / 2e-08 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 54 / 6e-08 AT2G25970 245 / 1e-73 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0537 [poplar] [flax] CCCH_zf PF14608 [poplar] [flax] zf-CCCH_2 RNA-binding, Nab2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G013200.1 pacid=42792887 polypeptide=Potri.001G013200.1.p locus=Potri.001G013200 ID=Potri.001G013200.1.v4.1 annot-version=v4.1 ATGGAATTTGGCGGCGGTCACCGGAAGAGAACCAGAAACGACGCTGCTTTTAATGGCAATGGTGGCCACAAAAAGAACAGACAAGAAATGGAGTCCTTTT CAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTACTTCTGGATGTCCATTTGGTGAGGGATGCCATTTCTTGCATTATGTTCCTGG TGGCTTCAAAGCTGTGTCTCAGATGCTTAATGTTGGTGGCAGCCCAGCTCTTCCACCAGCATCCAGAAATCAAGGTGTCCCAACCCTTTCTTATCAAGAT CGCTCTTCTCCTCCATCTGTGAAGTCCCGTTTGTGCAATAAATACAACACAGTTGAAGGTTGCAAGTTTGGTGATAAATGCCACTTTGCCCATGGTGAGT GGGAGCTTGGGAAGGCTTCTGCTGCTCCATCATATGAGGATCCTCGTGCCATGGGGCCAATTCCAGGCAGGATGAGTAGACACATGGAGCATCCACACCA AGGTCATGGTGCTGCAGCCAGCTTTGGGTCCTCTGCAACTACTAAGATCAGTATTGATGCATCACTTGCTGGAGCCATCATTGGAAAAAACGGTGTTAAC TCGAAGCATATTTGTCGTGTTACTGGAGCCAAGCTTTCCATAAGGGATCATGAGGCAGACCCTAAAAAGAGGAGCATAGAGCTCGAGGGTTCATTTGATC AGATCAGTCAAGCAAGTGACATGGTTCGCCAGCTTATTTCAAATGTCGGTCAAGCCTCTGGGCCTCCCATAAAAAACCAAGCAATGCACTCTTCTGGTGG ATCAAACAACTTCAAGACCAAGATCTGTGAGAACTTTAACAAAGGATCTTGCACTTTTGGGGATAGGTGCCATTTTGCACATGGTGCTGAGGAATTGCGC AAGTCGGGAATGTGA
AA sequence Show only first row Show all	>Potri.001G013200.1 pacid=42792887 polypeptide=Potri.001G013200.1.p locus=Potri.001G013200 ID=Potri.001G013200.1.v4.1 annot-version=v4.1 MEFGGGHRKRTRNDAAFNGNGGHKKNRQEMESFSTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMLNVGGSPALPPASRNQGVPTLSYQD RSSPPSVKSRLCNKYNTVEGCKFGDKCHFAHGEWELGKASAAPSYEDPRAMGPIPGRMSRHMEHPHQGHGAAASFGSSATTKISIDASLAGAIIGKNGVN SKHICRVTGAKLSIRDHEADPKKRSIELEGSFDQISQASDMVRQLISNVGQASGPPIKNQAMHSSGGSNNFKTKICENFNKGSCTFGDRCHFAHGAEELR KSGM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.001G013200 [exp]	0	1
					Potri.013G082000 [exp]	5.65	0.6520
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	16.09	0.6747
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	17.83	0.6593
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	27.23	0.6575
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Potri.001G357900 [exp]	30.51	0.6045	Pt-DDB1.1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.007G064800 [exp]	49.24	0.6260
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	50.91	0.6455
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	60.79	0.6083
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	61.91	0.6246
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	66.22	0.6333	Pt-SYNC3.1

Compare expression of checked genes

Potri.001G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.