Plant FIBer expression Database

Potri.001G013300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73240 464 / 1e-159 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G213050
[exp]
450 / 1e-157 AT1G73240 276 / 4e-90 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042457
[exp]
566 / 0 AT1G73240 486 / 6e-168 unknown protein
Lus10026210
[exp]
206 / 3e-64 AT1G73240 149 / 2e-43 unknown protein
Lus10026209
[exp]
190 / 1e-57 AT1G73240 157 / 7e-46 unknown protein
Lus10026211
[exp]
131 / 2e-34 AT1G73240 184 / 2e-54 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09531 Ndc1_Nup Nucleoporin protein Ndc1-Nup
Representative CDS sequence
>Potri.001G013300.1 pacid=42793730 polypeptide=Potri.001G013300.1.p locus=Potri.001G013300 ID=Potri.001G013300.1.v4.1 annot-version=v4.1
ATGTCTCCGCCGCCAGAACTGGTGTCGAAAAACAGATTCTTAGGGTTTCTAATTTGGCAAACCTTCACTTCGACCACCATTTACTTCCTCACAAAACTCT
TCCTCCTCGCCTTTTTTACCACTCCCAAATTTTCACCATCCCAACTATGTTTTTCACTTCTCAAGTTTTTTACTTTTACCTTCTCTAACCTCCTCTTCTC
TTCTTCTCTCTCTATCCTCTCATCTCCACAATCTCTTCCCTACGCCTCTCCTCTCCAGCTCGCCGCCGGTCTCGTCCGCTTTGCTTTTGTGTCGTCACCG
GCGGAGCCTGAGTTCCGCCGTCGTGCGTTGGTTTCGGCGAGATTTGTGGTGTTTGTGGTGGTTGCTGGGATATCTGGGGCTTTGTCAGTGGTGTGTTTGT
GTGGTTTTGATGGGTTTGAGTTGATTGCGAGGTTAGGATTTAGGGGTTTTGTGTTTGGGGTTTTGTATGGGTTGTTTGATGTTTATAAAAAAAGATGGGT
TTTGGAGTTTCCGATCATTCAGCGTCCTCTTTTCTACAGCTTCAAGATGGGACTTCCTTTGGCTATTAAACGAGCTTTAAAGCTTTCAAATGTGGCTTAC
CTATTCTTATCTGTGCTGCAAGTGTTTCTTCCAGAGCAATTTAAGAGTGGAGGGACCATGGGGCAGTTCATCACTGAGCAGATCATTCTGTATATTGGGA
GCTTTTCTGTGGTTTTCTGTTGGGAATTGAGTCACCATTTACATCAGGTGCTACACACAAAAAGGTTCTTATTTGCACCGCCAAAAGGTTCTGCTGCAGC
AGAGACAAATCCCAGCGAGCCTCTCCTTGCAGCCCTTGAGGAGAGCATTCCAGATTCCCTTCCACAGTATCTTGCATATCTTGATCTGTGTATGGTTTGT
GAGAATAATGTAGATACTTGGCGCCGAGCTGCATTTTTTGAAGAAACTGGTGAAACTTACAAAAGAGTTGTTGCTGCATGCTTGAGGCCTTTGGAACAGC
TTGCATCTAACTTGAGTGAAGGCTTGGAAGGTTGTTTTGTAGACAAGGCACACCAACTATCCAATCAATTGCAGTCGCCGACCGACTCTCAACTGGATTC
AAGGCACTGTGAACCACTAAACAACTTCCAGAAGTATGCATGGTGCGCCAGGGCAGTTGCCTCCTTGACTGCATGGTCGCACGAGGAGGACAGATTTGGG
GTTGCGCAACTCACTGGTAGCAATGCTGCTGTTACCTCAACACTTATCTCTAGCCTGCTCGCTGTTGAAGCTTTCATGGGGAAGAAGACAAGCTTGCAAC
CCCAACACTTGATGGGGCCAGCTGCTATTAAATGGAATACTCCAAACACAGGAAGAAGAGATGTTGTGACAACGAAAAAACAAGGTGGCCCTCAACATGC
AAAAGCTTATGCCATGGCGGATGTGCTAAGGACTTCAGTCTACAGCATTGTGTCTACTTTCCACGATGAGATGTTCACAAGTAACAAAGCAGGTCTTTTT
GAGAAGGATTGGGTCATTAAAAGCAAGCCCCTTTTCGGAACCTATGAGCTGCTTGTTCAGAAATTGCATCATTTCCTGGATTTCCGAGCTAACTAG
AA sequence
>Potri.001G013300.1 pacid=42793730 polypeptide=Potri.001G013300.1.p locus=Potri.001G013300 ID=Potri.001G013300.1.v4.1 annot-version=v4.1
MSPPPELVSKNRFLGFLIWQTFTSTTIYFLTKLFLLAFFTTPKFSPSQLCFSLLKFFTFTFSNLLFSSSLSILSSPQSLPYASPLQLAAGLVRFAFVSSP
AEPEFRRRALVSARFVVFVVVAGISGALSVVCLCGFDGFELIARLGFRGFVFGVLYGLFDVYKKRWVLEFPIIQRPLFYSFKMGLPLAIKRALKLSNVAY
LFLSVLQVFLPEQFKSGGTMGQFITEQIILYIGSFSVVFCWELSHHLHQVLHTKRFLFAPPKGSAAAETNPSEPLLAALEESIPDSLPQYLAYLDLCMVC
ENNVDTWRRAAFFEETGETYKRVVAACLRPLEQLASNLSEGLEGCFVDKAHQLSNQLQSPTDSQLDSRHCEPLNNFQKYAWCARAVASLTAWSHEEDRFG
VAQLTGSNAAVTSTLISSLLAVEAFMGKKTSLQPQHLMGPAAIKWNTPNTGRRDVVTTKKQGGPQHAKAYAMADVLRTSVYSIVSTFHDEMFTSNKAGLF
EKDWVIKSKPLFGTYELLVQKLHHFLDFRAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73240 unknown protein Potri.001G013300
[exp]
0 1
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.001G054400
[exp]
1.73 0.9485 CPN60.1
AT1G53540 HSP20-like chaperones superfam... Potri.001G238700
[exp]
9.16 0.9431 Pt-HSP17.13
AT5G58110 chaperone binding;ATPase activ... Potri.006G080900
[exp]
11.48 0.9078
AT2G32120 HSP70T-2 heat-shock protein 70T-2 (.1.2... Potri.010G088600
[exp]
12.00 0.9428
AT4G10250 ATHSP22.0 HSP20-like chaperones superfam... Potri.013G089200
[exp]
13.71 0.9423
AT4G25200 ATHSP23.6-MITO mitochondrion-localized small ... Potri.003G076000
[exp]
14.83 0.9384
AT1G52560 HSP20-like chaperones superfam... Potri.001G192600
[exp]
16.43 0.9382
AT1G23100 GroES-like family protein (.1) Potri.008G130500
[exp]
17.14 0.9371
AT2G29500 HSP20-like chaperones superfam... Potri.001G254700
[exp]
22.24 0.9295
AT3G07090 PPPDE putative thiol peptidase... Potri.002G241700
[exp]
22.27 0.9305

Potri.001G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.