Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19640 754 / 0 Major facilitator superfamily protein (.1) AT1G32450 655 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 619 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT3G54140 485 / 8e-166 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 466 / 3e-158 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 455 / 9e-154 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 441 / 9e-149 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 390 / 2e-129 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 352 / 5e-114 Major facilitator superfamily protein (.1) AT1G12110 352 / 9e-114 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212900 [exp] 1040 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.014G179400 [exp] 676 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G145200 [exp] 653 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 643 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.010G100200 [exp] 502 / 2e-172 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 476 / 2e-162 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 467 / 7e-159 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 462 / 1e-156 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 454 / 1e-153 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013736 [exp] 805 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 791 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10040102 [exp] 645 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 645 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10030945 [exp] 644 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 639 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 485 / 1e-165 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 485 / 1e-165 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 481 / 8e-164 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 471 / 5e-160 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G013400.1 pacid=42788102 polypeptide=Potri.001G013400.1.p locus=Potri.001G013400 ID=Potri.001G013400.1.v4.1 annot-version=v4.1 ATGGATTCGTTCTCTTCCACCAACGCTGTGCTAAAGAAGCAGGTGACAGGAGAAAGTAGTATCATCTCTAGGGAAAATGTAGCTGTGAAGAGAATCAGAA CTGAGGAAGAACAGGAGATTGCTAACAGAAAGCCTTCCCTTATTTGGAAGAGAACTGGAGGGTGGACAGCTGCAAGCATCTTGCTAGCAAATCAATGCCT GGCTACACTAGCTTTCTTTGGAGTTGGTGTGAATTTGGTTCTATTCTTAACAAGAGTTCTTGGTCAAAGTAATGCTGATGCTGCCAATAATGTCAGCAAG TGGACTGGCACAGTTTATCTGTGCTCACTCGTAGGAGCTTTCCTCAGTGATTCATACTGGGGTAGATACTTGACCTGTGCAATCTTTCAGCTAATATTCG TCTCGGGATTGGTGCTCGTATCGGTATCATCTTGGTTTTTCTTGATCAAACCAGATGGATGTGGTGATGGAAAATTAACCTGTGTGCCGGCAACATCGAT GGGACAAGTTGTTTTCTACTTGGCTATATACTTAGTAGCCTTTGGATATGGTGGACATCAACCTTCCATAGCGACATTTGGAGCAGATCAATTTGACGAG TCGAAACCGAAAGAAAGAAATTCCAAGGCAGCTTTCTTTTGCTATTTCTATTTTGCACTCAACTTTGGATCTTTATTCTCAAACACCCTTTTGGTGTACT TTGAGGATCATGGCAGATGGACACTAGGCTTCCTGCTATCATTAGGTTCTGCAGTCGTAGCCTTGGTATCATTCTTGTTTGGGGCACCTGGTTACAAGTA CGTAAAACCTTGCGGCAACCCTTTGCCGCGAGTTGCTCAGGTGTTTGTGGCTGCAGCTAGGAAATGGGATGTTATCCCGGTGAAAGCTGATGAACTGTAT GAACTAGAAGGACCAGAATCTGCTATCAAAGGGAGCAGGAAGATTTTTCACAGTGAAGAATTTGAGTTTTTGGACAAGGCAGCAACAATGACAGAGGATG ATTTGAGTCACCAAAAGAATCCATGGAGGCTTTGCACAATAACTCAAGTAGAGGAAGCCAAATGTGTTCTTAAAATGTTACCTATTTGGTTATGCACTAT TATTTACTCTGTTGTCTTCACTCAGATGGCATCCCTCTTTGTTGAGCAAGGAGATGTCATGAATTCCTATATTGGAAAGTTTCACCTCCCAGCTGCTAGC ATGTCTGCCTTCGATATCTGCAGTGTCCTTGTTTGCACTGGAATTTATCGTCAAATCCTCGTGCCATTAGCTGGAAGGTTAAGTGGTAATCCTAAGGGGT TAACTGAGCTTCAGAGGATGGGAATTGGACTCGTCATTGGAATGCTAGCAATGCTTGCAGCGGGTGCTACTGAGATTGAAAGGCTCAAGAATGTTATTGA AGGGCACAAAGTCAGCTCTTTAAGCATATTTTGGCAAATTCCACAATATGTTCTTGTTGGTGCATCCGAGGTTTTCATGTATATAGGTCAATTGGAGTTC TTTAATGGCCAAGCACCAGATGGGATCAAGAGTTTTGGAAGCTCACTTTGCATGGCTTCAATCTCTCTTGGCAACTATGCCAGTAGCATGCTAGTTAATA TGGTGATGAAGATTACAACTAAAGGTGACAAGCCTGGATGGATCCCAGATGACTTGAACACAGGACACATGGACAGGTTTTACTTCCTGATTGCAGTGTT AACAGCCTTTGATTTCGTGATTTACTTGTTCTGTGCCAAGTGGTACAAGCCTATCAACATTGATGACAGTCAGGGAATTGAGATGGAAAAGCAAGAAGAT GATGTGCTTGCAAAAGTTTAA
AA sequence Show only first row Show all	>Potri.001G013400.1 pacid=42788102 polypeptide=Potri.001G013400.1.p locus=Potri.001G013400 ID=Potri.001G013400.1.v4.1 annot-version=v4.1 MDSFSSTNAVLKKQVTGESSIISRENVAVKRIRTEEEQEIANRKPSLIWKRTGGWTAASILLANQCLATLAFFGVGVNLVLFLTRVLGQSNADAANNVSK WTGTVYLCSLVGAFLSDSYWGRYLTCAIFQLIFVSGLVLVSVSSWFFLIKPDGCGDGKLTCVPATSMGQVVFYLAIYLVAFGYGGHQPSIATFGADQFDE SKPKERNSKAAFFCYFYFALNFGSLFSNTLLVYFEDHGRWTLGFLLSLGSAVVALVSFLFGAPGYKYVKPCGNPLPRVAQVFVAAARKWDVIPVKADELY ELEGPESAIKGSRKIFHSEEFEFLDKAATMTEDDLSHQKNPWRLCTITQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSYIGKFHLPAAS MSAFDICSVLVCTGIYRQILVPLAGRLSGNPKGLTELQRMGIGLVIGMLAMLAAGATEIERLKNVIEGHKVSSLSIFWQIPQYVLVGASEVFMYIGQLEF FNGQAPDGIKSFGSSLCMASISLGNYASSMLVNMVMKITTKGDKPGWIPDDLNTGHMDRFYFLIAVLTAFDFVIYLFCAKWYKPINIDDSQGIEMEKQED DVLAKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	0	1
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	1.73	0.8731
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.006G221200 [exp]	2.44	0.8606
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	9.48	0.7956
AT3G19340			Protein of unknown function (D...		Potri.014G144500 [exp]	9.48	0.7592
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	9.59	0.7965
AT3G11760			unknown protein		Potri.010G244100 [exp]	13.74	0.7650
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	15.68	0.7841	Pt-CYP722.2
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.002G149600 [exp]	18.33	0.7440
AT5G59020			Protein of unknown function (D...		Potri.001G246200 [exp]	25.29	0.6875
AT4G04630			Protein of unknown function, D...		Potri.004G014000 [exp]	28.10	0.7570

Compare expression of checked genes

Potri.001G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.