Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T056064 [exp] 398 / 6e-143 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 398 / 6e-143 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 75 / 2e-16 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031220 [exp] 342 / 2e-120 AT5G19630 331 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10031797 [exp] 338 / 3e-119 AT5G19630 325 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10021039 [exp] 253 / 3e-85 AT5G19630 267 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) Lus10004187 [exp] 209 / 2e-68 AT5G19630 230 / 8e-77 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G013700.1 pacid=42790694 polypeptide=Potri.001G013700.1.p locus=Potri.001G013700 ID=Potri.001G013700.1.v4.1 annot-version=v4.1 ATGTCAAACTATACAGTTGAGTCCACCAAAGTAGAGACAAGTGATGGAGCCAAGCTGCATACAAGGCTGTTCAAGCCAATAGAGGAAGGAGATGTAAAAG ACAACTTGGTGATTGTTCTTGTACATCCATTTTCAATCTTGGGTGGTTGTCAAGCACTTTTAAAAGGAATTGCTGCTGGGTTAGCTGAAAAAGGTTATAA AGCTGTGACCTTTGATATGAGAGGTGCTGGTAAGTCTACTGGGAGGGCTTCTCTTACTGGTTTTTCTGAAATCAAGGATGTTATTGCTGTTTGCAAATGG GTCTGTGAGAATCTGTCTTCTGATAGGATTTTGTTGGTGGGTTCTTCTGCAGGTGCACCAATTGCAGGTTCTGCAGTCGATGAGATTAGAGAAGCGGTTG GCTATGTAAGTATAGGGTACCCCTTTGGCATGTTCGCCTCCATCCTTTTTGGAAGACACCACAAGGCAGTCCTGAACTCTCCAAAGCCAAAACTTTTTGT TATGGGAACTAGAGATGGGTTTACCAGTGTAAAGCAGCTGCAGAACAAGCTGAGTTCTGCTGTAGGACGCGTTGAAACACATCTAATTGAAGGAGCAAGC CATTTCCAAATGGAAGGCCCTGAATTTGATAACCAGATGGTGAACCTTATCCTTCCGTTTATCTCATCATTATAG
AA sequence Show only first row Show all	>Potri.001G013700.1 pacid=42790694 polypeptide=Potri.001G013700.1.p locus=Potri.001G013700 ID=Potri.001G013700.1.v4.1 annot-version=v4.1 MSNYTVESTKVETSDGAKLHTRLFKPIEEGDVKDNLVIVLVHPFSILGGCQALLKGIAAGLAEKGYKAVTFDMRGAGKSTGRASLTGFSEIKDVIAVCKW VCENLSSDRILLVGSSAGAPIAGSAVDEIREAVGYVSIGYPFGMFASILFGRHHKAVLNSPKPKLFVMGTRDGFTSVKQLQNKLSSAVGRVETHLIEGAS HFQMEGPEFDNQMVNLILPFISSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.001G013700 [exp]	0	1
AT1G36980			unknown protein		Potri.005G171901 [exp]	5.19	0.7239
AT3G18430			Calcium-binding EF-hand family...		Potri.018G103600 [exp]	8.71	0.6914
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Potri.014G131200 [exp]	12.16	0.6554
					Potri.013G126000 [exp]	14.83	0.6278
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	19.59	0.6253	Pt-ERF1.3
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.011G007100 [exp]	21.63	0.6376
AT1G05790			lipase class 3 family protein ...		Potri.002G231450 [exp]	21.79	0.5891
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.001G169700 [exp]	28.70	0.6365
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.013G009900 [exp]	30.00	0.6020
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Potri.003G060600 [exp]	35.56	0.6255

Compare expression of checked genes

Potri.001G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.