Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 439 / 2e-152 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 274 / 1e-87 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 263 / 9e-85 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 240 / 6e-76 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT5G20030 47 / 2e-05 Plant Tudor-like RNA-binding protein (.1) AT5G47690 45 / 9e-05 binding (.1.2.3) AT1G80810 45 / 0.0001 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G57970 44 / 0.0001 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T070080 [exp] 698 / 0 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 696 / 0 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 419 / 3e-144 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 405 / 2e-138 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 337 / 7e-113 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 333 / 1e-111 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 53 / 3e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 48 / 9e-06 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.003G181300 [exp] 48 / 2e-05 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031223 [exp] 431 / 1e-148 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 399 / 9e-137 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 395 / 4e-135 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 392 / 4e-134 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 275 / 2e-88 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 235 / 7e-74 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 151 / 4e-44 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10026078 [exp] 50 / 4e-06 AT4G31880 228 / 1e-66 unknown protein Lus10003091 [exp] 49 / 7e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10014715 [exp] 49 / 7e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G013800.10 pacid=42788040 polypeptide=Potri.001G013800.10.p locus=Potri.001G013800 ID=Potri.001G013800.10.v4.1 annot-version=v4.1 ATGGATTACGAGCTTTCTGATAGCAGCGGAACTGATGATGACCTTCCACCTACACATCGAAATAGATTCCAAAGTGGGGCGCGAACTGCTGGGAATGGAA GATCTGCAGTTGGTGGTGCTGCTTCACAGCCAAGGTTGCATAGTGACATGGAAACTCAAATCCACAACATTGAACAAGAAGCATACACTTCAGTCCTGCG TGCCTTTAAAGCCCAGTCAGATGCTATTACTTGGGAAAAGGAAAGTCTAATTACAGAACTCAGAAAAGAACTAAGAGTTTCAGATGAGGAGCACAGGGAG CTCCTAGCCAGGGTTAACGCTGATGATATGATTCGGAGGATAAGGGAATGGAGAAAGGCGAACGGGATCCAACCTAGCATGCCAAGCACTGCCCAGCCTT CTCACGATCCTATACCTAGTCCTACTGTTTCAGGATCACGCAAGAAGCAGAAAACCTCACAGTCAGTCGCATCATTGTCCATGGTTGTACCTTCTCCTGT ATTGCATCCATCTATGCAACCATCTACATCAGCCCTGAGACATGGCCCTCCACCTGGATCTGGGAACAAGAAGCCCAAATCATCCATGCAGCAGCGTTCT ACAGGTTTGTCCAGCAGGGCTCAAGCTGCTAATCGTGGTTCTTCAGGTGTCTTCGCAACCAATGATTTAATTGGAAAGAAAGTTTGGACTCGATGGCCAG AGGATAACCACTTCTATGAAGCTGTTATAACTGACTACAATCCAGTTGAGGGTCGGCATGCTTTGGTTTATGATATTAATACTGGGGATGAAACATGGGA ATGGGTCAATCTCAAAGAGATATCTCCTGAAGATATTAGGTGGGAGGGTGAGGAACCAGGACTTTTCCGTAGAGGTGGCCGGCCTGGACCAGGCCGTGGG AATAAGAAAGCCATTGCACGTGGTGGTGCAGTTGTCACTGCAGGAAGAGGTAGAGGAACCACAAAGGGTCAGTCCAAAAAAGATTTCCCTTTAATCCAGA ATGGCATTGGGAAGAAGGCTATGGGTGATATTGAGATACTTCACACAAATACTCTAATCAAGGAGGTAGAAAAAGTTTTTGGTGCTAGCCATCCTGATCC TTTGGAAATTGAGAAAGCAAAGAAAGCTCTGGAAGAACAAGAACAAGCCCTGGTCAACGCCATTGCAAGGCTTGAAGAAGCATCAGATGGTGAGAGTGCA GATGAGGGGGAACATCCATTTCCCCGTGTTCAATCAATGGACCAAGATCGGGGATGGAGAAAACGGTCATATGATGAGATTGTTGGTGAAGGTAGAGGAA TTGAAGGTTCAGATGGCAACAAAATGGCAAGAAATGGCAGAATTGTTTCAAGTGATCAGCATGATGAGAACTATGACATGTGA
AA sequence Show only first row Show all	>Potri.001G013800.10 pacid=42788040 polypeptide=Potri.001G013800.10.p locus=Potri.001G013800 ID=Potri.001G013800.10.v4.1 annot-version=v4.1 MDYELSDSSGTDDDLPPTHRNRFQSGARTAGNGRSAVGGAASQPRLHSDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE LLARVNADDMIRRIREWRKANGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPSPVLHPSMQPSTSALRHGPPPGSGNKKPKSSMQQRS TGLSSRAQAANRGSSGVFATNDLIGKKVWTRWPEDNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEGEEPGLFRRGGRPGPGRG NKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKKAMGDIEILHTNTLIKEVEKVFGASHPDPLEIEKAKKALEEQEQALVNAIARLEEASDGESA DEGEHPFPRVQSMDQDRGWRKRSYDEIVGEGRGIEGSDGNKMARNGRIVSSDQHDENYDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	0	1
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Potri.004G100700 [exp]	1.00	0.8411
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.018G030500 [exp]	1.73	0.8185
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	2.23	0.8060
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	4.00	0.8205	Pt-ALA5.2
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	8.06	0.7747	CEO1.2
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.012G051200 [exp]	8.71	0.8146
					Potri.013G037900 [exp]	12.00	0.7877
AT1G72820			Mitochondrial substrate carrie...		Potri.006G223600 [exp]	13.56	0.6907
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Potri.010G121500 [exp]	15.29	0.6987
AT1G33230			TMPIT-like protein (.1)		Potri.001G454400 [exp]	16.43	0.7150

Compare expression of checked genes

Potri.001G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.