Plant FIBer expression Database

Potri.001G013900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13030 989 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031800
[exp]
1017 / 0 AT5G13030 962 / 0.0 unknown protein
Lus10031224
[exp]
1017 / 0 AT5G13030 967 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02696 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family
Representative CDS sequence
>Potri.001G013900.1 pacid=42792365 polypeptide=Potri.001G013900.1.p locus=Potri.001G013900 ID=Potri.001G013900.1.v4.1 annot-version=v4.1
ATGCCACCACTGCTTTCTCATTCCTCCTCTTCACTCTCCCTCCTCCGTCCCTTCCTCCCTATCAAATTCCCTTTCTACCCTCCCCCTTTCGTCAAATCCC
AATTCTGCCCTCTATCACCTCCTGCTCACCTCTTCAAACCCTCCCTGTCACGCCACGTCAGCACGAGCTCCTTCCCTTCTAGCAGAGGTAGAGGTAGTAG
TGTTTCCATGGAGTCATCCTCACCAGAACCAACTGTGTCACTCGACTCCGTGACGCAGGATTTAAAGAATCAAACTTTAGGTCCTGATGATGTTAGTAAG
GCTAAATTGAAGCTTGAAGATCTCAATTGGGACCATTCTTTTGTTAGAGCATTGCCCGGGGATCCAAGGGCTGATACAATTCCACGTCAGGTGATGCATG
CTTGCTATACGAAAGTGTTACCATCTGCTGAAGTGGAGAACCCTGAGCTTGTTGCTTGGTCTGATTCTGTTGCTGATTTATTTGATTTGGATCCTAAAGA
ATTTGAAAGGCCAGATTTTCCCCTTTTGTTTTCAGGGGCTTCTCCTTTGGTTGGAGCGTTGCCATATGCTCAGTGCTATGGAGGACATCAATTTGGGATG
TGGGCAGGTCAGCTGGGTGATGGTAGGGCAATAACACTTGGGGAGGTTGTAAATTCAAAGTCTGAAAGGTGGGAACTGCAACTTAAAGGTTCCGGGAGGA
CTCCGTATAGCCGTTTTGCAGATGGCCTTGCGGTTTTGCGTAGCAGCATTAGGGAATTTCTTTGCAGTGAAGCAATGCACTGTCTAGGAATCCCGACAAC
TCGTGCACTTTCTCTCGTGACAACAGGAAAATATGTTACCCGTGACATGTTTTACGATGGCAATGCAAAGGAAGAACCTGGTGCTATTGTTTGCCGAGTT
GCACCATCCTTTCTTCGGTTTGGTTCGTACCAAATACATGCCTCTAGAGGGAAAGAGGACCTTGAAATTGTTCGTGCTTTGGCAGATTATGCCATCAGAC
ATCATTTTCCTCATATTGAGAACATGAATAAAAGCGAGAGCTTATCTTTTAGTACAGGTGATGAAGATCATTCAGTTGTGGATCTGACCTCAAACAAGTA
TGCAGCTTGGACAGTGGAGATTGCTGAACGGACTGCTTCTATGATCGCAAGCTGGCAAGGGGTTGGCTTTACACATGGAGTAATGAACACTGACAACATG
AGTATACTGGGTCTCACCATTGATTATGGTCCCTTTGGATTCCTGGATGCCTTTGATCCTAGTTTCACTCCAAACACCACGGATCTTCCAGGAAGAAGAT
ACTGTTTTGCAAATCAGCCTGATATTGGTTTATGGAATATTGCACAGTTCACAGCTACCCTTTCAACTGCCAAGTTGATTAGCGATAAGGAGGCAGATTA
TGCCATGGAAAGATATGGAAACAAATTCATGGATGAGTATCAAGCTATGATGACTAGAAAACTTGGCCTTCCAAAGTACAATAAACAATTGATCAGCAAA
CTCCTTAATAATATGGCTGTGGATAAAGTTGATTACACAAATTTCTTCCGGTTGCTTTCCAATGTTAAAGCAGACCCAAAAATTCCGGAAGATGAGTTGT
TAGTTCCCCTGAAGGCTGTTCTTTTAGATATTGGACAGGAGCGTAAAGAGGCATGGATGAGCTGGGTGCAATCCTATGTGCATGAGCTGGCTGCTAGTGG
GATCTCAGATGAGCAGAGGAAGGCCCAAATGAATTCAGTAAACCCCAAGTATGTTCTCCGAAACTACTTGTGCCAGACTGCCATTGATGCAGCTGAACAA
GGTGATTACACAGAGGTCAGGAGGCTCCTTAAATTAATGGAGCGGCCGTATGATGAGCAGCCTGGAATGGAAAAATATGCTCGCCTTCCACCAGCCTGGG
CGTATCGGCCTGGTGTTTGCATGCTTTCATGCTCTTCATGA
AA sequence
>Potri.001G013900.1 pacid=42792365 polypeptide=Potri.001G013900.1.p locus=Potri.001G013900 ID=Potri.001G013900.1.v4.1 annot-version=v4.1
MPPLLSHSSSSLSLLRPFLPIKFPFYPPPFVKSQFCPLSPPAHLFKPSLSRHVSTSSFPSSRGRGSSVSMESSSPEPTVSLDSVTQDLKNQTLGPDDVSK
AKLKLEDLNWDHSFVRALPGDPRADTIPRQVMHACYTKVLPSAEVENPELVAWSDSVADLFDLDPKEFERPDFPLLFSGASPLVGALPYAQCYGGHQFGM
WAGQLGDGRAITLGEVVNSKSERWELQLKGSGRTPYSRFADGLAVLRSSIREFLCSEAMHCLGIPTTRALSLVTTGKYVTRDMFYDGNAKEEPGAIVCRV
APSFLRFGSYQIHASRGKEDLEIVRALADYAIRHHFPHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWTVEIAERTASMIASWQGVGFTHGVMNTDNM
SILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFTATLSTAKLISDKEADYAMERYGNKFMDEYQAMMTRKLGLPKYNKQLISK
LLNNMAVDKVDYTNFFRLLSNVKADPKIPEDELLVPLKAVLLDIGQERKEAWMSWVQSYVHELAASGISDEQRKAQMNSVNPKYVLRNYLCQTAIDAAEQ
GDYTEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13030 unknown protein Potri.001G013900
[exp]
0 1
AT1G68300 Adenine nucleotide alpha hydro... Potri.010G123200
[exp]
1.73 0.9033
AT3G48480 Cysteine proteinases superfami... Potri.010G180300
[exp]
8.94 0.8853
AT2G41705 camphor resistance CrcB family... Potri.005G174600
[exp]
10.09 0.9061
AT4G35760 NAD(P)H dehydrogenase (quinone... Potri.005G106500
[exp]
11.66 0.9049
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.013G037700
[exp]
14.49 0.8915
AT5G03560 Tetratricopeptide repeat (TPR)... Potri.016G096900
[exp]
17.88 0.8963
AT1G31830 Amino acid permease family pro... Potri.003G103600
[exp]
18.76 0.8686
AT1G71180 6-phosphogluconate dehydrogena... Potri.001G211500
[exp]
32.61 0.8773
AT1G18265 Protein of unknown function, D... Potri.009G078800
[exp]
33.43 0.8775
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Potri.016G066000
[exp]
33.63 0.8568

Potri.001G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.