Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LIP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04640 387 / 3e-138 LIP2 lipoyltransferase 2 (.1.2) AT4G31050 130 / 1e-36 Biotin/lipoate A/B protein ligase family (.1) AT1G47578 129 / 2e-36 Biotin/lipoate A/B protein ligase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G131000 [exp] 125 / 1e-34 AT1G47578 360 / 6e-126 Biotin/lipoate A/B protein ligase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031225 [exp] 368 / 1e-130 AT1G04640 358 / 1e-126 lipoyltransferase 2 (.1.2) Lus10031801 [exp] 367 / 5e-130 AT1G04640 355 / 2e-125 lipoyltransferase 2 (.1.2) Lus10025664 [exp] 129 / 1e-35 AT4G31050 346 / 8e-120 Biotin/lipoate A/B protein ligase family (.1) Lus10008181 [exp] 55 / 5e-09 AT4G31050 107 / 1e-28 Biotin/lipoate A/B protein ligase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF03099 [poplar] [flax] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Potri.001G014000.4 pacid=42791538 polypeptide=Potri.001G014000.4.p locus=Potri.001G014000 ID=Potri.001G014000.4.v4.1 annot-version=v4.1 ATGATATTTCCACGAAGTCTTGAGGTTTGGAAATTAGGTAAAGTCAACTACTTGGAAGCACTTAAGCTGCAGGAAAAGCTGGTGTGTGATAGAAAAGCAT ATAAGATTCCAGATACGCTGTTGTCCCTGCAACATCCTCCTACATATACTCTTGGCAAACGGCGCACTGATCATAATTTGTTGATCCCTGTGCCTGAACT TGAAAAGATAGGAGCTGAACTTCACTATACACAAAGAGGAGGTGACATTACATATCACGGTCCTCATCAAGCCATCTTATACCCCATCATTTCTCTTCGT GACATTGGACTTGGTGCTCGGAAGTATGTGGAAAAACTTGAGTTAACAATGATTGATATGGCGTCACAATATGGTGTGAAAGCTTGTGCTGGAAAAAAGT GTGAGACCGGTGTTTGGGTTGGAGATAGAAAGATTGGTGCAATTGGAGTTCGCATATCATCTGGAATCACTTCTCATGGATTGGCGTTCAACGTTGATCC TGATTTAGACTATTTTAAGCACATTGTGCCTTGTGGGATTGCTGATAAAGAAGTTACATCTTTGAGAAGGGAGACAGGTACTGTGCTTCCTTCTGAAGAA GTAATTCATGAGCAGTTGATTTCTTGTTTTGCAAGAATATTTGGTTTCAATAATCTTATTTGGAAGGAAAACGAGCCAACATTGCTAGATAATGGGAAAC CTGAAAGACACGTGGATTGA
AA sequence Show only first row Show all	>Potri.001G014000.4 pacid=42791538 polypeptide=Potri.001G014000.4.p locus=Potri.001G014000 ID=Potri.001G014000.4.v4.1 annot-version=v4.1 MIFPRSLEVWKLGKVNYLEALKLQEKLVCDRKAYKIPDTLLSLQHPPTYTLGKRRTDHNLLIPVPELEKIGAELHYTQRGGDITYHGPHQAILYPIISLR DIGLGARKYVEKLELTMIDMASQYGVKACAGKKCETGVWVGDRKIGAIGVRISSGITSHGLAFNVDPDLDYFKHIVPCGIADKEVTSLRRETGTVLPSEE VIHEQLISCFARIFGFNNLIWKENEPTLLDNGKPERHVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	0	1	LIP2.2
AT3G09860			unknown protein		Potri.016G092100 [exp]	2.23	0.8689
AT2G42770			Peroxisomal membrane 22 kDa (M...		Potri.010G032900 [exp]	6.08	0.8854
AT1G65320			Cystathionine beta-synthase (C...		Potri.013G087100 [exp]	10.95	0.8075
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.012G106000 [exp]	10.95	0.8795	ICE1.2
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.017G101900 [exp]	11.74	0.8817	NEMDH.3
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	14.07	0.8046	Pt-SAL2.1
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Potri.007G010700 [exp]	19.44	0.8285
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	33.98	0.7935	LPD1,Pt-LPD.1
AT1G42960			unknown protein		Potri.007G064100 [exp]	34.20	0.7899
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	36.75	0.7741

Compare expression of checked genes

Potri.001G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.