Plant FIBer expression Database

Potri.001G014050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G014050.1 pacid=42788383 polypeptide=Potri.001G014050.1.p locus=Potri.001G014050 ID=Potri.001G014050.1.v4.1 annot-version=v4.1
ATGCCTGCGATGCAAAGCCATGTGTCACAAAAACTTGAAGAACCTGACAAGGAAGGAAGAACATCAAATTCTTCTGCATCTTCTAAAAGGAATGTAAAAG
GTCCCAGGTTTTCAGCCAGTGTTGTCCTTGCCCTTCCAGCACCCTGCACTCAACCAGCTCGTGGCAAAAAAGTTTATCGTACACAAAAGGAACTTCCCTT
GAAGAAAAGGAAGAAGTCCCGGAAATTGGAAATTGAAAGAACGCAGGCAGAAAAGGAAGAAGCTGCTACTGTAAAGCCGGCCAGAACAAAAGAAGCTTTC
AACAAGCATGACACCAGTCAGGTGAGGACCTGCATCAATTGTTTGTTGAATTGTGAATCATCGCCCCCTCATTCAAGCACTTATGATTCACATGGGCTTC
AAAATGAAGAAGATAAGTTGGTGGAAACAGCTACTCTGCATGGCGAAAAGCCAAACAGAAAGAGGGGAAGGCCAAGGAAGGATTCAGTGCATCAGTCAAT
GGCAACTTTAGGTACTTCTCCCTTTTAG
AA sequence
>Potri.001G014050.1 pacid=42788383 polypeptide=Potri.001G014050.1.p locus=Potri.001G014050 ID=Potri.001G014050.1.v4.1 annot-version=v4.1
MPAMQSHVSQKLEEPDKEGRTSNSSASSKRNVKGPRFSASVVLALPAPCTQPARGKKVYRTQKELPLKKRKKSRKLEIERTQAEKEEAATVKPARTKEAF
NKHDTSQVRTCINCLLNCESSPPHSSTYDSHGLQNEEDKLVETATLHGEKPNRKRGRPRKDSVHQSMATLGTSPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G014050
[exp]
0 1
AT1G04420 NAD(P)-linked oxidoreductase s... Potri.015G042100
[exp]
1.73 0.7959
AT1G75060 unknown protein Potri.003G130100
[exp]
2.44 0.7476
AT4G26190 Haloacid dehalogenase-like hyd... Potri.015G059000
[exp]
2.44 0.7168
AT1G01020 ARV1 Arv1-like protein (.1.2) Potri.002G181700
[exp]
3.16 0.7688
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
6.32 0.7090
AT4G26310 elongation factor P (EF-P) fam... Potri.001G004300
[exp]
12.00 0.7308
AT1G15215 SHH1, DTF1 SAWADEE homeodomain homolog 1,... Potri.018G046200
[exp]
13.67 0.6767
AT3G20475 ATMSH5 MUTS-homologue 5 (.1) Potri.011G089500
[exp]
14.49 0.7199
AT3G30841 Cofactor-independent phosphogl... Potri.004G106200
[exp]
19.74 0.6250
AT4G37740 GRF ATGRF2 growth-regulating factor 2 (.1... Potri.003G100800
[exp]
26.26 0.6674

Potri.001G014050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.