Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 279 / 3e-86 RLK1 receptor-like protein kinase 1 (.1) AT1G61420 81 / 7e-16 S-locus lectin protein kinase family protein (.1) AT4G21390 78 / 3e-15 B120 S-locus lectin protein kinase family protein (.1) AT1G61490 78 / 5e-15 S-locus lectin protein kinase family protein (.1) AT1G34300 77 / 6e-15 lectin protein kinase family protein (.1) AT1G61430 76 / 2e-14 S-locus lectin protein kinase family protein (.1) AT1G61380 75 / 3e-14 SD1-29 S-domain-1 29 (.1) AT4G21380 73 / 2e-13 ARK3 receptor kinase 3 (.1) AT2G41890 71 / 8e-13 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT1G65790 71 / 8e-13 ARK1 receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G014600 [exp] 466 / 5e-158 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 463 / 9e-157 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 463 / 9e-157 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 456 / 5e-154 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 437 / 1e-146 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 420 / 6e-140 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 361 / 4e-117 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084200 [exp] 340 / 3e-110 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G153800 [exp] 334 / 9e-107 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 341 / 3e-109 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 298 / 1e-92 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 296 / 4e-92 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 290 / 8e-90 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 285 / 4e-88 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 279 / 1e-85 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10040160 [exp] 256 / 3e-78 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1) Lus10031228 [exp] 233 / 4e-73 AT5G60900 161 / 2e-44 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 165 / 3e-44 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 152 / 8e-40 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G014401.1 pacid=42787955 polypeptide=Potri.001G014401.1.p locus=Potri.001G014401 ID=Potri.001G014401.1.v4.1 annot-version=v4.1 ATGGCATTTGATCTTCCTTGTATTCTATACTTCTTCTTTTTGCTGTTCCCAAGTTCTTTGGTAGCTCAAAGGAATGGAAATGCAACGGTGGGAGACTCCC TCACTGCAGGCGATGAGGCAACACTGTGGCTTTCTCCTGCTGAGGATTTCGCTTTTGGGTTTCGTCAGCTAGACAAAAAGGATCTCTACTTGCTTGCCAT ATGGTACAACAAAATCCCAGACAAAACCATAGTTTGGTATGCAAATGGAGATAGACCTGCGCCAAAAAAGTCCACGGTGAAGTTAACTGCTGAACTTGGA GTAGTGCTTAACAATCCTCAAGGTGGAGAAATCTGGAAATCTGGTCCTGGTAACGGTGAGGCAGCGTATGGTTTCATGAATGACACAGGCAACTTTCTGG TTGCAAATGCAAATGGAGAAAAGTTGTGGCAGAGTTTTGAGTTGCTTACTGATACCCTGTTGCCTACACAGATAATGGAAAAGGGGGGGATTCTTTCTTC TAGACTATCAGAGACCAACTTTTCACAAGGCAGGTTCCAGTTCCGTTTGATTCCGGACGGAAATGCTGTGCTTAATACCATCAATTTGCCAACTGGGTTT CCATATGAAGCCTACTTTTGGAGCAAAACAGTAGATTCTAACTCATCAAATGCTGGATATCAAGTTGTCTTCAATGAGTCCGGATACTTGTATGTTTTGA GAGCAAACAATACGAGAGAGGCATTGACACTAGGAAGAGTAGTCCCAGCTACTGAAAATTATCATAGAGCAACTTTACATTTTGATGGAGTTTTCGTCCT GTACTCCCACCCGAAGAATTCTCCTGGTAATGAAAACTGGTCTGTCGTTCGCACCATGCCAGAAAATATTTGCACTGTTGTTCGTGGACTGAAAGGTTCA GGACCTTGCGGATATAATGGTGTCTGCACAATCAGTACAGATAAGAGGGCAATCTGCAGATGTCCACAGAGATTTTCTCTACTCGATCCTGATGATCCAT ACGGAGGCTGCAAACCAGATTTTCCGACACAGGTCTGTGCAGAAGAAGTGCCAAATGCCCCAGAAGATTATGAATTGGTTCCGCTCACCAATATTGATTG GCCAGAATCAGATTATGAGATGTACACTCCTTATAATATTGAAGACTGTAAAAAGGCTTGCCTACAAGATTTCTTCTGTAATGTAATTGTGTTTGGAGAA GGAACCTGTTGGAAGAAGAGGCTCCCACTCTCAAATGGGAGGCAAGGTGAGAGCGTAAATGGAGCGTCATTTATGAAAGTGAGAAAAGGTAATTACACAC TACCAGGACCTCCTCCAATCCCGAAGAAGAACCGTGATAGTTGA
AA sequence Show only first row Show all	>Potri.001G014401.1 pacid=42787955 polypeptide=Potri.001G014401.1.p locus=Potri.001G014401 ID=Potri.001G014401.1.v4.1 annot-version=v4.1 MAFDLPCILYFFFLLFPSSLVAQRNGNATVGDSLTAGDEATLWLSPAEDFAFGFRQLDKKDLYLLAIWYNKIPDKTIVWYANGDRPAPKKSTVKLTAELG VVLNNPQGGEIWKSGPGNGEAAYGFMNDTGNFLVANANGEKLWQSFELLTDTLLPTQIMEKGGILSSRLSETNFSQGRFQFRLIPDGNAVLNTINLPTGF PYEAYFWSKTVDSNSSNAGYQVVFNESGYLYVLRANNTREALTLGRVVPATENYHRATLHFDGVFVLYSHPKNSPGNENWSVVRTMPENICTVVRGLKGS GPCGYNGVCTISTDKRAICRCPQRFSLLDPDDPYGGCKPDFPTQVCAEEVPNAPEDYELVPLTNIDWPESDYEMYTPYNIEDCKKACLQDFFCNVIVFGE GTCWKKRLPLSNGRQGESVNGASFMKVRKGNYTLPGPPPIPKKNRDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014401 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	6.32	0.9177
AT1G11200			Protein of unknown function (D...		Potri.011G044200 [exp]	7.74	0.8700
					Potri.002G252400 [exp]	9.32	0.9003
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073316 [exp]	9.89	0.8899
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	10.48	0.8273	Pt-RPT2.4
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	13.71	0.8969
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072866 [exp]	16.24	0.8562
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	17.86	0.8730
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	20.97	0.8762
AT1G78170			unknown protein		Potri.002G096100 [exp]	21.21	0.8733

Compare expression of checked genes

Potri.001G014401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.