Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 574 / 0 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 370 / 2e-115 lectin protein kinase family protein (.1) AT4G32300 332 / 2e-101 SD2-5 S-domain-2 5 (.1) AT5G35370 293 / 2e-86 S-locus lectin protein kinase family protein (.1) AT5G24080 277 / 1e-84 Protein kinase superfamily protein (.1) AT4G00340 266 / 4e-77 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 253 / 3e-72 S-locus lectin protein kinase family protein (.1) AT4G21380 243 / 1e-68 ARK3 receptor kinase 3 (.1) AT1G65800 234 / 1e-65 ARK2 receptor kinase 2 (.1) AT4G11900 234 / 1e-65 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084900 [exp] 918 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 913 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 911 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 907 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 905 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 903 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 900 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 897 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 866 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031231 [exp] 805 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 800 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 752 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 668 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 623 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 580 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 491 / 6e-162 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 464 / 1e-151 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 385 / 2e-125 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 362 / 3e-112 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.001G014700.1 pacid=42787624 polypeptide=Potri.001G014700.1.p locus=Potri.001G014700 ID=Potri.001G014700.1.v4.1 annot-version=v4.1 ATGAAAGTTGTCTTTCATGTGATGGCTTTTCTGGTACCATATTCTTCCTGTCTTTTGTTTCTTGTTATACTGCCACAACCATTTCCTGCCACTGCTGAAT CTTACAAGAAAATAACTTTAGGCTTATCTCTCACCGCATCGAACAACGATTCCTGGCAATCGCCATCTGGTGAATTTGCGTTCGGTTTCCAGCAGGTGGC AGTTGATGGCTTCTTACTAGCAATCTGGTTCGACAAAATACCTGAAAAAACCATCCTTTGGTCAGCCAACAGAAATAATCTAGTGCAAAGAGGGGATAAA GTTAAGCTCATGAAAGATGGCCAATTAGTGCTTAATGACCGAAAAGGCAAACAGATATGGCGTGCTGATACTGCTGGTAGCAGGGTGGCCTATGCAGCTA TGCTTGACAGTGGAAACTTTGTCCTGGCAAGACACGATTCAGTCAATTTGTGGGAGAGCTTCCGGGAACCGACTGACACTCTATTGCCTACACAAACTTT CAGTCAAGGGAGCAAACTTGTTGCTGGTTACTCCAGCATGAATCGCTCAACTGGAAGATATCAGTTCACTCTACAATCTGATGGGAATCTTGTGCTTTAC ACCCTAGCTTTCCCAATAGGTTCTGTTAATTCTCCCTACTGGTCATCTAAAACTGAAGGCAATGGGTTTCTTTTGAGCTTCAACCAGTCTGGCAACATTT ACCTTGCAGCAAAAAATGGAAGGATGCTAGTCATGCTTTCATCAGATCCTCCACCAACTAGTGACTTTTATCATAGAGCAATTCTTGAGTATGATGGGGT TTTTAGGCATTATGTCTACCCGAAGAGCATGAATCCTGGTGCCGCTGGCTGGCCTCTGAGATGGTCTCCCCTGACCTCCTCCTTCATACCTCCAAACATC TGCACGAGTATTCGAGAAAATAATGGTTGTGGAGCTTGCGGATTCAACAGCTACTGCAGTCTTGGAAATGACCAGAAACCAAAGTGCAGCTGTCCACCGG GGTATACCTTCTTGGATCCGAATGATGTGATGAAGGGATGCAAGCAAAACTTTGTTTCGCAGAATTGTGAAGAAGCGTCACAAGAAACAGAACTTTTCTA CTTGGAGCAGAAGGAAAATACAGACTGGCCACTGTCTGATTCTGAACACTTTAGTACAGTAACTGAGGAGTGGTGCAGGAAGGCTTGCTTGAGTGATTGT TTTTGTGCTGTTGCAATTTTCAGAGATGGGAATTGTTGGAAGAAGAAAATTCCGTTGTCTAATGGGAGGTTTGATCCCAGCGTTGGAGGAAGAGCGTTGA TAAAAATACGGCAAGATAATTCTACTTTGAACCCTGCAGATGATGATGTTCCAAAAAACAAAAGCCGTTCGACTATAATCATCATTGGATCACTGTTGGT AATTAGTTCTGTGTCTCTTAACTTTCTCTTCATCCTAAGAGCTTTTCTGGATGTTCTCCAATTTGGCTATGAGAAAACAAAGAAGCGTTACTTAGAGCCA ACCGATCCAGGTGTAACTCTTCGAAGTTTCACATTCAGTGAACTAGAAAAGGCCACAGGTAATTTCGAGGAAGAACTTGGTAGTGGAGCTTTTGCAACAG TTTACAAAGGGACTCTAGATTTCGACGAAAGAACTTTTGTCGCAGTTAAGAATTTGGACAAGATGGTGAGAGACTGTGAGAAAGAATTCAAAGCTGAAGT GAATGCAATTGGGAGAACAAATCACAAGAATTTAGTGAAACTACTAGGATTCTGCAACGAAGGGGAACATCGCCTTCTGGTTTATGAGCTCATAAGAAAT GGCAACTTGGCAAATTTCCTATTTGGAAATCCAAGACTTAATTGGTTCAAAAGAATGCAGATTGCTTTTGGAGTTGCAAGAGGACTCTTTTACTTGCATG AAGAATGCAGCACACAGATCATACATTGTGATATAAAACCTCAAAACATTCTTCTTGATGAATCTTTCAGAGCTATAATTTCTGACTTTGGAATAGCCAA GCTATTGAAGGCAGACCAGACTCGAACTTCGACTGCGATTAGAGGAACTAAAGGATATTTGGCCCCCGAATGGTTTAAGAACCTGCCTGTTACTGTCAAG GTAGATGTCTACAGCTTTGGAATTTTGTTGCTAGAGCTCATTTGTTGCAGGAAAAATTTTGAACCAGAAGTGAAGAATGAAGATCAGATGGTTCTGGCTT ACTGGGCATATGACTGCTACAGAGATGGGAAAGCAGGCCTGCTCGTGGCAAATGATGATGATGCAGTGCTTGACATGAAGAGAGTGGTGAAGTTTGTGAT GATTGCAATCTGGTGCATTCAGGAGGATCCATCACTGAGACCTACTATGAAGAAAGTCACCCTGATGCTGGAAGGAACTGTTGAAGTTTCTGCTCCTCCG GATCCATCCTCGTTTATTAGCTCAATCGAATCGTTTTGA
AA sequence Show only first row Show all	>Potri.001G014700.1 pacid=42787624 polypeptide=Potri.001G014700.1.p locus=Potri.001G014700 ID=Potri.001G014700.1.v4.1 annot-version=v4.1 MKVVFHVMAFLVPYSSCLLFLVILPQPFPATAESYKKITLGLSLTASNNDSWQSPSGEFAFGFQQVAVDGFLLAIWFDKIPEKTILWSANRNNLVQRGDK VKLMKDGQLVLNDRKGKQIWRADTAGSRVAYAAMLDSGNFVLARHDSVNLWESFREPTDTLLPTQTFSQGSKLVAGYSSMNRSTGRYQFTLQSDGNLVLY TLAFPIGSVNSPYWSSKTEGNGFLLSFNQSGNIYLAAKNGRMLVMLSSDPPPTSDFYHRAILEYDGVFRHYVYPKSMNPGAAGWPLRWSPLTSSFIPPNI CTSIRENNGCGACGFNSYCSLGNDQKPKCSCPPGYTFLDPNDVMKGCKQNFVSQNCEEASQETELFYLEQKENTDWPLSDSEHFSTVTEEWCRKACLSDC FCAVAIFRDGNCWKKKIPLSNGRFDPSVGGRALIKIRQDNSTLNPADDDVPKNKSRSTIIIIGSLLVISSVSLNFLFILRAFLDVLQFGYEKTKKRYLEP TDPGVTLRSFTFSELEKATGNFEEELGSGAFATVYKGTLDFDERTFVAVKNLDKMVRDCEKEFKAEVNAIGRTNHKNLVKLLGFCNEGEHRLLVYELIRN GNLANFLFGNPRLNWFKRMQIAFGVARGLFYLHEECSTQIIHCDIKPQNILLDESFRAIISDFGIAKLLKADQTRTSTAIRGTKGYLAPEWFKNLPVTVK VDVYSFGILLLELICCRKNFEPEVKNEDQMVLAYWAYDCYRDGKAGLLVANDDDAVLDMKRVVKFVMIAIWCIQEDPSLRPTMKKVTLMLEGTVEVSAPP DPSSFISSIESF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014700 [exp]	0	1
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Potri.001G219900 [exp]	12.84	0.6753
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	13.63	0.7753
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	13.78	0.7865
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	15.74	0.7734
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G043000 [exp]	18.43	0.7016
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	28.61	0.7417
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	29.69	0.7536
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	41.53	0.7052
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	59.37	0.6818
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.017G113700 [exp]	64.62	0.6988

Compare expression of checked genes

Potri.001G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.