Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59600 334 / 9e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 317 / 2e-98 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 302 / 9e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 297 / 4e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 296 / 2e-91 MEF22 mitochondrial editing factor 22 (.1) AT3G49142 295 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 297 / 4e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 290 / 7e-88 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 285 / 3e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 287 / 7e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243800 [exp] 339 / 1e-109 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 333 / 3e-104 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 304 / 3e-95 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G090900 [exp] 305 / 5e-95 AT3G14730 650 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 304 / 8e-93 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 299 / 2e-92 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 294 / 6e-91 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 290 / 1e-90 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G059400 [exp] 297 / 2e-90 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016511 [exp] 332 / 7e-107 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 327 / 5e-102 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 309 / 1e-97 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039703 [exp] 307 / 2e-96 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 292 / 1e-90 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 291 / 2e-90 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040917 [exp] 301 / 3e-90 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000706 [exp] 295 / 4e-90 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10037362 [exp] 291 / 1e-89 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 292 / 2e-89 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G014900.3 pacid=42792724 polypeptide=Potri.001G014900.3.p locus=Potri.001G014900 ID=Potri.001G014900.3.v4.1 annot-version=v4.1 ATGGGGATTAATCAAAGATTATACATGATAATGCAAACCCCATTTTTGGTGTCAAGAAGCAACATTTCATTAGACCCTATTGCTGGTTTGCTAAAACAGT GCTTAAAGTTTAAAACTTTAAGAGGCGGGAAGCAAGTTCATGCTTGGTTAGTTACTAGAGGGACTGATTTGAGAATATTGTCACTGAATTCAAAGCTTGT TGGCATGTATGCAAGCTGTGGAGACGTAAAGTCTGCAACTTTAGTCTTTAAGAGGATCCGAAACCCAAATGTTTTTGCGTTGAATTGGATGGTTTTAGCC TCTGCATTTGAAGGGTATTACAAAGAGGCTATAGGGTACTTTTGTTCAATGAAAGATTCAGTTTTTATTTACAATAAGTATACTTTCTCCATTGTTTTGA AAGCTTTTGTTGGTTTATTGGATTTGAATAAAGGAAAGGAGGTTCATTCTATGGTCAAACAATTGGGTTTTGAAAGTGATGTTTGTGTGGCTAATGCTTT GGTGGATATGTATAGTAAATGTGGGTGTATTGGTTATGCACGTACAGTGTTTGATAGAATGGCGAAGAGAGATATTGTTTCTTGGACTTCGATGATTTCT GGTTATTGTAATGTAGGGAAGATTGAGGAAGCTCTTGTTTTGTTTGAGAGAATGAAGTTGGAGGGATTGGAACCGAATGATTTCACGTGGAATGCTTTGA TTTCCGGTTATGCTAGGAGAGGAGACAGTGATGGAGCATTTTCACTTTTGTCGAAGATGACTAGAGAAGGGTTGGTTCCTGATTTGGTTACTTGGAATGC AATGATTGCAGGTTTTGTTCAGGGGGAGAGAGCTGGTGATGCTTTTAAGTTGTTTCAGGACATGTTGGTTTTAGGGGTTAAGCCTAACCTTGTGACCGTT GCAGGATTGCTACCAGCATGTGGGATGGTTAGTTCAATACAAAGAGGTAGAGCGATTCATGGACTGGTATATAGATTGGAGTTTGATATTAGTAATGCAT TTATTGCTAGTGCTCTTATTGACATGTACTCAGAGTGTGGCAGTTTCAAAGAAGCTAGAACTGTATTTGAGAAGATACATAACAAAAATGTTGCATCATG GAATGCTATGATTGGATGCTACGGCAAGCATGGCATGGTGAACACGTCAATACAGTTGTTTGAGAGAATGCATGGAGAAGGAATTCAGGCAAATGATGTG ACTTTGCTTTGTGTTCTTTCTGCTTGTAGCCACAGTGGTTATGTTGAGAAAGGGTTGGAAATTTTTTGGTCCATGAAAGAGAGGTACATGGTTGATCGCA AGAAAGAGCATTATGCTTGTGTTGTTGATATGTTGTCTCGTTCTGGGAGGCTGGTAGATGCCTATGAATTAGTGAAGGAAATGCCAATAGAAGTCACAAA ATCAATTGCTGGAGCTTTCTTCAATGGATGTATGATCCATGGAAGAAGAGATTTGGCTGAAAAGATGATAGATGATGTTACAAGAGGGGACTTGAAAAAA CCTGGATCATTTGCGATGCTGTCAGCTATTTATGCTACCAGTGGAGAAAGGAAAGAGGTTCGCAATACCATGAAGAAGATCGTGAAAGAAAGGAAAGCGC AGAAGGAGCCTGCCTGTAGTCAGGTTGAGGAGAAGGATGAGTTTGTTGGAGTTGAAATAGAGAAAGAAAATAATGAAGTTAGAGGAGCAGAGGAAGCTGA TGAAGACTCTAAAGAAGTACACAGAGATGGAGTTGGGATATATACTGGCATTGATTCCTAA
AA sequence Show only first row Show all	>Potri.001G014900.3 pacid=42792724 polypeptide=Potri.001G014900.3.p locus=Potri.001G014900 ID=Potri.001G014900.3.v4.1 annot-version=v4.1 MGINQRLYMIMQTPFLVSRSNISLDPIAGLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRIRNPNVFALNWMVLA SAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEVHSMVKQLGFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMIS GYCNVGKIEEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTREGLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTV AGLLPACGMVSSIQRGRAIHGLVYRLEFDISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGCYGKHGMVNTSIQLFERMHGEGIQANDV TLLCVLSACSHSGYVEKGLEIFWSMKERYMVDRKKEHYACVVDMLSRSGRLVDAYELVKEMPIEVTKSIAGAFFNGCMIHGRRDLAEKMIDDVTRGDLKK PGSFAMLSAIYATSGERKEVRNTMKKIVKERKAQKEPACSQVEEKDEFVGVEIEKENNEVRGAEEADEDSKEVHRDGVGIYTGIDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	0	1
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	3.16	0.9331
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	3.74	0.9284
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	5.00	0.9177
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.006G256300 [exp]	5.19	0.9158
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	6.92	0.9230
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	9.64	0.9346
AT3G11591			unknown protein		Potri.008G011620 [exp]	10.81	0.9069
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	12.96	0.9007
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	13.60	0.7901
AT4G15720			Tetratricopeptide repeat (TPR)...		Potri.008G217000 [exp]	14.96	0.8436

Compare expression of checked genes

Potri.001G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.