Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-L1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44640 553 / 0 BGLU13 beta glucosidase 13 (.1) AT2G44450 547 / 0 BGLU15 beta glucosidase 15 (.1) AT5G42260 545 / 0 BGLU12 beta glucosidase 12 (.1) AT2G44480 544 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 542 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT2G25630 508 / 2e-177 BGLU14 beta glucosidase 14 (.1) AT5G24550 508 / 8e-177 BGLU32 beta glucosidase 32 (.1) AT5G24540 499 / 3e-173 BGLU31 beta glucosidase 31 (.1) AT5G54570 486 / 5e-168 BGLU41 beta glucosidase 41 (.1) AT1G26560 484 / 8e-168 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085301 [exp] 659 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 657 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 635 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227200 [exp] 572 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 566 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 564 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G223900 [exp] 546 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 546 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.002G219600 [exp] 545 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031235 [exp] 630 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 625 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 622 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 612 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10026057 [exp] 573 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 559 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 550 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 548 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10024065 [exp] 548 / 0 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10003915 [exp] 546 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.001G015100.1 pacid=42791079 polypeptide=Potri.001G015150.1.p locus=Potri.001G015100 ID=Potri.001G015100.1.v4.1 annot-version=v4.1 ATGGCAACTCAAAGCTATGTGTTGTGTATTCTCATTCTTGGCTTGGTAGCCAGTAATATTGTAGCCTCTACTACACCTAGCCATGAGATTCATTCTTTTA ATCGTCAGAGTTTTCCACCAGGTTTCATTTTTGGGGCAGCATCAGCAGCTTACCAGTACGAAGGTGCAGCTTTCCAAGATGGCAAAGGACTAAGCATATG GGATACATTTACGCATAAATTTCCTGAAAAAATAGCTGATCGTAGCAATGGAGACGTGGCTGATGATCAATATCATCGTTACAAGGAAGATGTTAAGATC ATGAAAGACATGGGCTTAGACTCCTACAGATTTTCAATCTCATGGCCTAGAATATTGCCAAAAGGAAAGCTGAGTGGGGGAGTGAATAAAGCAGGAATCA AATACTACAACAACCTCATTAATGAGCTCGTAGCAAATGGCTTAAAACCCCTGGTGACTCTTTTCCATTGGGACACTCCTCAAGCCTTAGATTCTGAGTA TGGGAGTTTTCTAAGTACTAGGATTGTGAAAGACTTCGAGGACTATGTAGATGTTTGCTTTAGAGAATTTGGAGATAGAGTTAAGCACTGGATCACATTG AATGAACCAAATATCTTTACTTCGGGAGGCTATGCTTCTGGTGGTGGTGCACCAAATAGATGTTCAGCTTGGCAGAATTTAAATTGTACTGGTGGAGATT CATCAACAGAACCATATGTGGTAGGACACAATCTGATTAAATCTCATGCTGCTGCTGTAAGATTATACAAGGCAAAATACCAGGCAACTCAAAAGGGCAT AATAGGGATCACAGTAGCATCCCACTGGTTTTTGCCATACTCTAATTCTACACAGGACAAAGCTGCTGCACAACGGTCCCTGGATTTCTTGTATGGATGG TACATGGATCCAGTAGTTTTCGGTGATTATCCAAGTTCAATGAGGTCTCTTGTTGGGAAAAGATTACCCAAATTCACCAAGGAGGAATCTGCATTTATAA AGGGATCATTTGATTTTATTGGGTTGAATTACTACACTGCTTTCTATGCGGAAAATTTGCCTATATCAAATATTTCACATCCAAGCTCCTTGACGGATAG TCTTGCCACCAGTAGGAGTGATCGTAATGGTGTTCTTATTGGTCCACAGGCAGGATCAACTTGGCTCCATGTTTATCCTAAAGGAATTCGTAAACTTTTG CTCTACACCAAGAGGAAATACAATGATCCAGTTATTTACATCACTGAGAATGGCGTAAGTGAGGTAAATAATGAAGGCAAATTAACGCTTAAGCAACAAC TAAATGACACCATGAGGATCGATTACTACCGTAGCCATCTCTCTTTCTTGAGATTAGCAATGGCTGAGGGTGTCAAGGTGAAGGGATACTTCGCATGGTC ATTTTTGGATGACTTCGAATGGAATTCTGGTTACACCGTAAGATTTGGTATCATCTACATTGATTATAAAAATGGATTGAAGAGAATCCCAAAACTCTCA GCTCGGTGGTTCAAGAACTTCCTCGAGAAAAAGAAGGCATGA
AA sequence Show only first row Show all	>Potri.001G015100.1 pacid=42791079 polypeptide=Potri.001G015150.1.p locus=Potri.001G015100 ID=Potri.001G015100.1.v4.1 annot-version=v4.1 MATQSYVLCILILGLVASNIVASTTPSHEIHSFNRQSFPPGFIFGAASAAYQYEGAAFQDGKGLSIWDTFTHKFPEKIADRSNGDVADDQYHRYKEDVKI MKDMGLDSYRFSISWPRILPKGKLSGGVNKAGIKYYNNLINELVANGLKPLVTLFHWDTPQALDSEYGSFLSTRIVKDFEDYVDVCFREFGDRVKHWITL NEPNIFTSGGYASGGGAPNRCSAWQNLNCTGGDSSTEPYVVGHNLIKSHAAAVRLYKAKYQATQKGIIGITVASHWFLPYSNSTQDKAAAQRSLDFLYGW YMDPVVFGDYPSSMRSLVGKRLPKFTKEESAFIKGSFDFIGLNYYTAFYAENLPISNISHPSSLTDSLATSRSDRNGVLIGPQAGSTWLHVYPKGIRKLL LYTKRKYNDPVIYITENGVSEVNNEGKLTLKQQLNDTMRIDYYRSHLSFLRLAMAEGVKVKGYFAWSFLDDFEWNSGYTVRFGIIYIDYKNGLKRIPKLS ARWFKNFLEKKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.001G015100 [exp]	0	1	Pt-L1.1
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	2.44	0.9786
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Potri.004G126901 [exp]	3.46	0.9694
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.004G149000 [exp]	5.00	0.9685	Pt-AOS.4,CYP74C7-1
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.003G211100 [exp]	5.91	0.9515
					Potri.002G012433 [exp]	8.48	0.9423
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	10.19	0.9452	Pt-ATGSTF13.1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227200 [exp]	10.95	0.9413
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.012G092200 [exp]	11.66	0.9315
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	14.45	0.9367
AT5G01750			Protein of unknown function (D...		Potri.016G131600 [exp]	14.83	0.9249

Compare expression of checked genes

Potri.001G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.