Plant FIBer expression Database

Potri.001G015450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G064950
[exp]
137 / 2e-42 ND /
Potri.T002868
[exp]
38 / 0.0005 ND /
Potri.T002668
[exp]
38 / 0.0005 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G015450.1 pacid=42788670 polypeptide=Potri.001G015450.1.p locus=Potri.001G015450 ID=Potri.001G015450.1.v4.1 annot-version=v4.1
ATGGAAGCACCTGTTTCTGGAGATTGCGAAGAAGGCTGCAACGCTGGTGTGAATGCTTTGGTTCGGCTGCTTTCCGCTCTTTCTCCCGGGACGAAGAAGA
TAATTTCAAAGATAATGCTCCTCCTTGAGACTGTTATCTTCCACGAACGAGATTACAGGCGAGAGACGTGGTCCACGATTGGATCGAACCCGTTGCAGAT
TTTCAGCCTATTGAATCGGGATGGAGAAGACGAACACGGCTGTTCCACCAGCAACGGCGGCGTTTCGGCAGCAAGGGATTCCACCAGCAACGGCAACGTT
TCAGCAGCAATGGACATTTTCTTTTTGACCCCTGAACTTTGGAAATTCGGCAATTGGACCCCTAATCAATTAAAAATTTCTTTTAATTTTGCCCCTTTTG
GATTAATTTCAATTAAATCCCTAAATTGGTACACTGTTTACAAAACAGTCCTTAATTCCTGGATTGTTCAATTTGGTTCTTAA
AA sequence
>Potri.001G015450.1 pacid=42788670 polypeptide=Potri.001G015450.1.p locus=Potri.001G015450 ID=Potri.001G015450.1.v4.1 annot-version=v4.1
MEAPVSGDCEEGCNAGVNALVRLLSALSPGTKKIISKIMLLLETVIFHERDYRRETWSTIGSNPLQIFSLLNRDGEDEHGCSTSNGGVSAARDSTSNGNV
SAAMDIFFLTPELWKFGNWTPNQLKISFNFAPFGLISIKSLNWYTVYKTVLNSWIVQFGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G015450
[exp]
0 1
AT5G58930 Protein of unknown function (D... Potri.001G248400
[exp]
2.23 0.6918
AT5G42370 Calcineurin-like metallo-phosp... Potri.005G259700
[exp]
2.82 0.6859
AT5G17400 ER-ANT1 endoplasmic reticulum-adenine ... Potri.012G062500
[exp]
6.48 0.6780
AT3G43520 Transmembrane proteins 14C (.1... Potri.006G217400
[exp]
8.48 0.6434
AT3G47570 Leucine-rich repeat protein ki... Potri.012G044500
[exp]
24.97 0.6226
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Potri.002G086900
[exp]
26.83 0.6263
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Potri.009G041700
[exp]
33.46 0.6137
ATCG00630 ATCG00630.1, PS... PSAJ (.1) Potri.003G067501
[exp]
35.79 0.6653
ATCG00020 ATCG00020.1, PS... photosystem II reaction center... Potri.005G154836
[exp]
41.37 0.6607
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
49.43 0.6219

Potri.001G015450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.