Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIL3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73730 495 / 5e-170 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT3G20770 369 / 4e-120 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 360 / 5e-117 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT5G10120 293 / 1e-92 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 281 / 4e-87 EIL Ethylene insensitive 3 family protein (.1) AT5G21120 266 / 7e-82 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210500 [exp] 952 / 0 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.004G197400 [exp] 371 / 7e-121 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 366 / 1e-118 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 364 / 8e-118 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 363 / 1e-117 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G016032 [exp] 120 / 2e-31 ND / Potri.001G015966 [exp] 0 / 1 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031245 [exp] 646 / 0 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031817 [exp] 641 / 0 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 283 / 2e-88 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 273 / 2e-84 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [poplar] [flax] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Potri.001G015900.1 pacid=42792199 polypeptide=Potri.001G015900.1.p locus=Potri.001G015900 ID=Potri.001G015900.1.v4.1 annot-version=v4.1 ATGGGTGAATTGGAAGAGATTGGAGCTGATATTTGCGCGGACCTTGAAGCTGATGATATAAGGTGTGACACTATCGCGGAGAAAGATGTCACTGATGAAG AAATTGAAGCAGAAGATTTGGAGAGGCGAATGTGGAAGGATCGTATCAAACTCAAAAGGCTTAAAGAAAAACAGAAGCTTGCAGCACAACAAGCTGCGGA GAAGCAAAAGCCCAAGCAGACGTCAGATCAAGCTCGGAGGAAGAAAATGTCGAGAGCCCAGGATGGAATTCTCAAGTATATGTTGAAGTTAATGGAAGTG TGCAAAGCACGTGGATTTGTGTATGGAATCATTCCAGAGAAGGGTAAGCCAGTAAGTGGTGCATCTGATAACATAAGAGCTTGGTGGAAAGAAAAGGTGA GGTTCGATAAGAACGGGCCAGCAGCCATAGCAAAGTATGAAGCAGAGTGTTTGGCCATGGGTGAGGCAGAGAACAGTAAAAATGGGAACTCTCAAAGTGC TCTTCAAGATCTTCAAGATGCAACTTTAGGGTCTCTTTTGTCTTCTTTGATGCAACACTGTGATCCCCCCCAAAGGAAGTACCCATTGGAGAAGGGAGTT CCACCACCTTGGTGGCCAACGGGAAATGAAGATTGGTGGGTAAAATTAGGACTATCCCAAGGCCAGAGCCCTCCTTATAAGAAACCACATGATTTGAAGA AGATGTGGAAAGTTGGGGTATTAACAGCTGTAATAAAGCACATGTCACCTGATATTCCAAAAATTAGAAGGCATGTGCGTCAATCAAAATGCTTACAGGA TAAGATGACCGCAAAGGAGAGTGCAATTTGGTTAGGGGTGTTGAGTCAAGAGGAATCTCTCATTCGGCAACCTAGCAGTGACAATGGAACATCTGGTGTA ACTGAAACTCCTCAAGGCGGACATGGCCAAAAGAAGAAACGTGCCATTAGTAGTGATAGTGATTATGATGTTGATGGTGCTGATGATGGTGTGGGTTCAG TTTCATCTAAAGATAATAGGAGAAATCAATCAATGGATGTGGAGCCATTAAACAGTCGAGATGATGCTACCAATCCTGTCCAAGATAAGGAGCTAGGGAA AAAGCAACCAAGGAGAAAAAGGCCCCGTGTGAGGTCAAGCCATGCTGATCAACATCCTCAACCACAGCTGAATGATGATCATTTGGGTGTTGAGAGGACA AGTACTTTGCCTGATATAAATCACACTGATTTACAGCCAGTTGACTATCAGATGCATGACACTCAGCATGAAAATTTTACATCTTCAACTGTAAGGCCTC TGGAGAATGGTTTTGTGGGTGAATCCAACCTACCCCAATCTGACTTTAACTACTATGCTGGTGTTCCTTCTGCCAATGTCAATTCTACGGAGAAAATTTA TGCAGACAAAGGGCCTGCCTTTTATCCATTGGGCCAAAATTCAGTGCTGCACCATGAGACTACTTATAGTAATTTCTATAATCCATCACTTGATTATGGG ACAAATCATGATAGGCAGCCTTCTCAGATGACAATGAGCATCAGGCAAGAGGATGACAGATTCCATATACCAGCACCGCAAGGAAATGGAAATGACTTGA CTGGAGGAGAACCACATCATCTTATCAAAGATACATTTCCCACTGAGCAAGATGGAGCTGTTGATAGGCAATTTGAATTTGACTTGCCAGATTTTGCAAT TAACAGCCCATTCCTTGAAATGAGTTCGTTTTCATTGGATGACTTATTTGTTGATCCTGAGGATGAATTGATCCAATGCTTTGGTGCATAG
AA sequence Show only first row Show all	>Potri.001G015900.1 pacid=42792199 polypeptide=Potri.001G015900.1.p locus=Potri.001G015900 ID=Potri.001G015900.1.v4.1 annot-version=v4.1 MGELEEIGADICADLEADDIRCDTIAEKDVTDEEIEAEDLERRMWKDRIKLKRLKEKQKLAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEV CKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVRFDKNGPAAIAKYEAECLAMGEAENSKNGNSQSALQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGV PPPWWPTGNEDWWVKLGLSQGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPDIPKIRRHVRQSKCLQDKMTAKESAIWLGVLSQEESLIRQPSSDNGTSGV TETPQGGHGQKKKRAISSDSDYDVDGADDGVGSVSSKDNRRNQSMDVEPLNSRDDATNPVQDKELGKKQPRRKRPRVRSSHADQHPQPQLNDDHLGVERT STLPDINHTDLQPVDYQMHDTQHENFTSSTVRPLENGFVGESNLPQSDFNYYAGVPSANVNSTEKIYADKGPAFYPLGQNSVLHHETTYSNFYNPSLDYG TNHDRQPSQMTMSIRQEDDRFHIPAPQGNGNDLTGGEPHHLIKDTFPTEQDGAVDRQFEFDLPDFAINSPFLEMSSFSLDDLFVDPEDELIQCFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	0	1	Pt-EIL3.2
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	2.64	0.9150
AT3G22980			Ribosomal protein S5/Elongatio...		Potri.009G152500 [exp]	3.74	0.8843
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	4.24	0.8897
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	4.58	0.8941
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.009G159200 [exp]	6.00	0.8865	EIN3A,EIN3.2
AT1G06870		Plsp2A	plastidic type I signal peptid...		Potri.014G036400 [exp]	6.48	0.8921
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	6.63	0.8933
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	7.07	0.8963
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	7.21	0.8858
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	7.41	0.8930

Compare expression of checked genes

Potri.001G015900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.