Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20810 540 / 0 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G19840 86 / 4e-18 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G06550 63 / 1e-10 unknown protein AT3G45880 62 / 2e-10 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63080 44 / 0.0002 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215200 [exp] 85 / 2e-17 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.016G065400 [exp] 56 / 3e-08 AT5G06550 711 / 0.0 unknown protein Potri.009G025400 [exp] 52 / 4e-07 AT3G45880 417 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G233200 [exp] 51 / 7e-07 AT3G45880 404 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031247 [exp] 499 / 2e-177 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10031818 [exp] 493 / 5e-175 AT3G20810 497 / 1e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10000493 [exp] 77 / 6e-15 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10016202 [exp] 58 / 1e-08 AT5G06550 724 / 0.0 unknown protein Lus10029343 [exp] 57 / 1e-08 AT5G06550 730 / 0.0 unknown protein Lus10035699 [exp] 54 / 1e-07 AT3G45880 461 / 2e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001249 [exp] 44 / 0.0001 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF08007 [poplar] [flax] Cupin_4 Cupin superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.001G016200.1 pacid=42791356 polypeptide=Potri.001G016200.1.p locus=Potri.001G016200 ID=Potri.001G016200.1.v4.1 annot-version=v4.1 ATGTCCACCGCAACTACCGCCGCCGCCGCCGGAAACTATCTCACAACTCCTACGCTCGACGCCGAATCCTCAAACCTCCTCCAAACAATCTCATCCCACG GCGGCTATGCCTACGTCAGCATGTCAACACTCGCCGCCTCCGGCGACTTCAGAGCGGCGGAGGCAGCGAGAGAGATGGCGTGGGAGCAACTCCACTCCGG TCCCTGGCACTCCGTGCTTCCAGCCTGGCGTGATGCCTACTCAATGGCTTGCTTACACGTGGCAAAGTTTCATTATCGAAATGGTGAATTCAAAGAGTCG CTTAGGGTTTTGGATTTGGGATTGATCATGGGAGGTGTGCTGTTGAAGAAGGATTTGGAATCGGCTATTGAAATTGTGACAGCGAAATCGAGAGAAAAGG AAAGTGAGGGTTTTGAGAAAGGACCAAAGTGTAAATTTGTTGAAGAAGGGGATGAGTTTGATAAAGAGGAGGTGCTTCGTGTTTTACCAGAGAAGTCCTT GTCTAGTAAGATTGTGGTGAAGAAATCTGGTCTATCTTTAGAGGGATTTTTGCGTGAACATTTTCTATCTGGGTCTCCAGTTATAATTAGTGATTGTATG GCTCATTGGCCTGCCAGGACAAAATGGAATGATATGGATTACTTGAAAAGGGTTGCTGGTGACCGCACAGTTCCAGTTGAGGTTGGGAAAAACTATCTAT GCCAAGAGTGGAAGCAAGAGCTTATAACATTTTCTGAGTTTCTTGAGAAGATTCAGTCCAATGACTCTTCTTCTGCAGTCCCTACATATCTTGCACAGCA TCAATTATTTGATCAGATTAATGAGTTACGGAAAGACATTTGCATTCCTGACTACTGCTGTGCTGGTGGTGGGGAGCTTAGGTCTCTTAATGCTTGGTTT GGTCCAGCTGGGACAGTGACCCCACTGCACCATGATCCGCACCATAATATACTTGCTCAGGTTGTTGGCAAAAAGTATGTAAGGCTCTACACCTCTTCAG TGTCAGAGGAACTTTATCCATACAATGAGACTATGCTTTGCAATTCAAGCCAGGTCGACCTAGACAACATAGATGACGGACAATATCCGAAGGTGCATGA CCTAGAATTCTTGGACTGCATATTAGAGGAAGGAGAAATGCTTTACATCCCGCCAAAATGGTGGCACTATGTCCGATCTCTAACAATCAGTTTTTCAGTT AGCTTTTGGTGGAGCAACTCTGAAAGTTCGGATGCATCGTGA
AA sequence Show only first row Show all	>Potri.001G016200.1 pacid=42791356 polypeptide=Potri.001G016200.1.p locus=Potri.001G016200 ID=Potri.001G016200.1.v4.1 annot-version=v4.1 MSTATTAAAAGNYLTTPTLDAESSNLLQTISSHGGYAYVSMSTLAASGDFRAAEAAREMAWEQLHSGPWHSVLPAWRDAYSMACLHVAKFHYRNGEFKES LRVLDLGLIMGGVLLKKDLESAIEIVTAKSREKESEGFEKGPKCKFVEEGDEFDKEEVLRVLPEKSLSSKIVVKKSGLSLEGFLREHFLSGSPVIISDCM AHWPARTKWNDMDYLKRVAGDRTVPVEVGKNYLCQEWKQELITFSEFLEKIQSNDSSSAVPTYLAQHQLFDQINELRKDICIPDYCCAGGGELRSLNAWF GPAGTVTPLHHDPHHNILAQVVGKKYVRLYTSSVSEELYPYNETMLCNSSQVDLDNIDDGQYPKVHDLEFLDCILEEGEMLYIPPKWWHYVRSLTISFSV SFWWSNSESSDAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Potri.001G016200 [exp]	0	1
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Potri.001G243600 [exp]	1.00	0.7756
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.012G143800 [exp]	8.12	0.6429
AT1G59580		ATMPK2	mitogen-activated protein kina...		Potri.002G032100 [exp]	23.21	0.6610	Pt-MPK1.2
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.012G073600 [exp]	26.26	0.6461
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	34.40	0.6892
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Potri.006G230300 [exp]	35.66	0.5761	HDA910
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	40.42	0.6176
					Potri.005G063450 [exp]	40.69	0.5200
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	47.72	0.5665
					Potri.003G157401 [exp]	50.15	0.5891

Compare expression of checked genes

Potri.001G016200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.