Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12900 555 / 0 unknown protein AT1G12330 214 / 2e-62 unknown protein AT2G45260 67 / 9e-12 Plant protein of unknown function (DUF641) (.1) AT3G60680 57 / 2e-08 Plant protein of unknown function (DUF641) (.1) AT5G58960 54 / 2e-07 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 52 / 1e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 49 / 5e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210200 [exp] 961 / 0 AT5G12900 603 / 0.0 unknown protein Potri.003G115700 [exp] 231 / 3e-69 AT1G12330 503 / 2e-175 unknown protein Potri.001G117000 [exp] 229 / 4e-68 AT1G12330 465 / 1e-160 unknown protein Potri.002G145900 [exp] 62 / 4e-10 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 57 / 1e-08 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 56 / 6e-08 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.009G041000 [exp] 56 / 8e-08 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 55 / 1e-07 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 50 / 3e-06 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031249 [exp] 505 / 1e-173 AT5G12900 448 / 1e-151 unknown protein Lus10031820 [exp] 503 / 3e-173 AT5G12900 454 / 2e-154 unknown protein Lus10032197 [exp] 204 / 4e-59 AT1G12330 476 / 2e-165 unknown protein Lus10024559 [exp] 204 / 5e-59 AT1G12330 479 / 3e-166 unknown protein Lus10028918 [exp] 179 / 4e-51 AT1G12330 399 / 3e-137 unknown protein Lus10004335 [exp] 182 / 1e-50 AT1G12330 468 / 7e-162 unknown protein Lus10001989 [exp] 59 / 7e-09 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 57 / 2e-08 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 56 / 6e-08 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 49 / 1e-05 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G016600.1 pacid=42790147 polypeptide=Potri.001G016600.1.p locus=Potri.001G016600 ID=Potri.001G016600.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGCTGCCTTGCAAAGCTTACAAAACCATGACAACACCAACCAGGATGTTAGTAGAAAAGAATTACAGGCTTCCATTGCTAAGGCAGTGG ATCTTAGAGCTTTACATGCTGCTTTAATGCAAGGAAATAGCCCTGCTAATCTCAGATTCCCATCTTCTTCCCCTGTTTCACGCTCTGCTCCATACTTTTC TGCTCAAGATTACCCTGTTTTTACCCCTAGCTATGAGGATGAACGGTTACCGGGAAATCATCAGATTCTTACAAAAGCAAGAACATTATCAGAAAGTTGG GATGAGTTTGGCCTAGAAGGAGGAAGTGGCTATGAAACTGTTTTATCAGATTATAAGAAGGAGAATTCGTCGTCAAGGAAAGGAATTCCTTCTGATATAT CCAATATTTGTCCAGCTGAAGATCAAAAATCTGTCACTAGTTCACCAGCAAACAACATCACTGTGTATCAGCCTGAAACAGAATCTTACAAGTTTTCTAG GATGAATAGCTTGGCAGACTTCAAATCCATATCATCTTTCAATAGATGCAAGCCGGCTACTATAACTACCGAGTCTGAAAAGGTGACCAGGAATAGCAAG CATTCTAATATTGTTGTGCCATTGACTGATTCTCATTCATCCCTTCAATCACAACCGAAAAATCGAAGAGTGATGTCTTGGTTGTTTCCTAAGTTAAGGA AGAAGCAGAAGAATGATAATTCGTCGAACCAAACCGAATCCGAGGAGGTTTCGCAGACTTTCAAGGACTTGGGGATATTGTCAATTGAATCATTGAAGAG AAAATTGATGGAAGCAAATGAGCATAGAGATGCAGCCTTAACGGAGGTTGCTGAGATGAAATCTTCGTTGGGGGACCTAAGGTACAAGCTTGAGTACTTG GAGAGTTATTGTGAGGAGTTAAAGAAAGCTTTAAGGCAAGCAACACAAGCAAAAGACTCACAAGTTGTCGAAAAGCTCGGAAACTTGCCAAATAGAGGGA AATCCATTGATGGAAACGGAGAAAACTTGATGCCGGTAAGTGAAGAGGTGATGGTGGAAGGTTTCTTGCAGATAGTATCAGAAGCAAGACTTTCAGTGAA ACAATTCTGCAAGACTTTAGGACAGATTGAGGAAACAGACAGTACTCTCATGGACAGCTTGAACTTGCTTCTTCAACCATATAAACTGTCTCTAAAATCA AAGTATTCAAAGGCAGTACTATACCATTTGGAAGCCATAATAAACCAATCACTCTACCAAGATTTTGAGAACTGTGTGTTTCAAAAGAATGGCTCACCAA AGAATCTAGACCCAAACCAAGATCGTCAAGCACAGTTTTCGTCGTTCGTTGCATTGCGAAATCTAAGCTGGAATGAAGTTTTAAGGAAAGGGACGAAGTA CTACAGTGAAGAGTTTAGCAAGTTTTGTGATCAGAAAATGAGTTGTATTATTACAACAATAAATTGGACTGCAACATGGCCTGAACACCTTCTTCAAGCC TTTTTTGTTGCTGCTAAATGCATATGGTTGCTTCATTTGCTTGCCTTTTCATTCAATCCACCACTGGGAATTTTGAGGGTTGAAGAAAATAGAAACTTTG ATCCACATTTCATGGAAGACATGTTCATGGATAGGCAGAGATCACACCGTCAGAGCCGGGTTAAGATTATGGTGATGCCAGGGTTTTATGTCCAGGATAG GGTTTTAAGATGTAAGGTTCTTTGCAGGTACAAGTCTGTGCCTTAA
AA sequence Show only first row Show all	>Potri.001G016600.1 pacid=42790147 polypeptide=Potri.001G016600.1.p locus=Potri.001G016600 ID=Potri.001G016600.1.v4.1 annot-version=v4.1 MAAAAALQSLQNHDNTNQDVSRKELQASIAKAVDLRALHAALMQGNSPANLRFPSSSPVSRSAPYFSAQDYPVFTPSYEDERLPGNHQILTKARTLSESW DEFGLEGGSGYETVLSDYKKENSSSRKGIPSDISNICPAEDQKSVTSSPANNITVYQPETESYKFSRMNSLADFKSISSFNRCKPATITTESEKVTRNSK HSNIVVPLTDSHSSLQSQPKNRRVMSWLFPKLRKKQKNDNSSNQTESEEVSQTFKDLGILSIESLKRKLMEANEHRDAALTEVAEMKSSLGDLRYKLEYL ESYCEELKKALRQATQAKDSQVVEKLGNLPNRGKSIDGNGENLMPVSEEVMVEGFLQIVSEARLSVKQFCKTLGQIEETDSTLMDSLNLLLQPYKLSLKS KYSKAVLYHLEAIINQSLYQDFENCVFQKNGSPKNLDPNQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITTINWTATWPEHLLQA FFVAAKCIWLLHLLAFSFNPPLGILRVEENRNFDPHFMEDMFMDRQRSHRQSRVKIMVMPGFYVQDRVLRCKVLCRYKSVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12900			unknown protein		Potri.001G016600 [exp]	0	1
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Potri.016G038500 [exp]	4.69	0.8339
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Potri.014G137400 [exp]	5.00	0.8492
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.016G115400 [exp]	6.00	0.7978
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G107700 [exp]	11.61	0.8197
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	14.69	0.8078
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	16.15	0.8065
AT5G65250			unknown protein		Potri.007G095600 [exp]	16.43	0.7990
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	29.46	0.8195
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	35.58	0.8134
AT5G55960			unknown protein		Potri.001G370500 [exp]	39.23	0.7747

Compare expression of checked genes

Potri.001G016600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.