Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65360 235 / 3e-81 Histone superfamily protein (.1) AT5G10400 235 / 3e-81 Histone superfamily protein (.1) AT5G10390 235 / 3e-81 Histone superfamily protein (.1) AT3G27360 235 / 3e-81 Histone superfamily protein (.1) AT1G09200 235 / 3e-81 Histone superfamily protein (.1) AT4G40040 232 / 6e-80 Histone superfamily protein (.1.2) AT4G40030 232 / 6e-80 Histone superfamily protein (.1.2.3) AT5G10980 232 / 6e-80 Histone superfamily protein (.1) AT5G65350 224 / 6e-77 HTR11 histone 3 11 (.1) AT1G75600 223 / 1e-76 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233900 [exp] 235 / 3e-81 AT5G65360 271 / 1e-95 Histone superfamily protein (.1) Potri.014G096900 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.002G028800 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G210100 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G207852 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.003G207700 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.001G016900 [exp] 235 / 3e-81 AT5G65360 235 / 3e-81 Histone superfamily protein (.1) Potri.007G096700 [exp] 232 / 6e-80 AT5G10980 274 / 1e-96 Histone superfamily protein (.1) Potri.007G014300 [exp] 232 / 6e-80 AT5G10980 274 / 1e-96 Histone superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031822 [exp] 235 / 3e-81 AT5G10400 271 / 1e-95 Histone superfamily protein (.1) Lus10005271 [exp] 235 / 3e-81 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10005270 [exp] 235 / 3e-81 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10031250 [exp] 235 / 3e-81 AT1G09200 271 / 1e-95 Histone superfamily protein (.1) Lus10025439 [exp] 235 / 3e-81 AT5G65360 271 / 1e-95 Histone superfamily protein (.1) Lus10012744 [exp] 234 / 6e-81 AT5G65360 271 / 2e-95 Histone superfamily protein (.1) Lus10031821 [exp] 236 / 8e-81 AT3G27360 273 / 3e-95 Histone superfamily protein (.1) Lus10013948 [exp] 235 / 4e-80 AT3G27360 272 / 7e-95 Histone superfamily protein (.1) Lus10031252 [exp] 232 / 4e-80 AT3G27360 268 / 2e-94 Histone superfamily protein (.1) Lus10012757 [exp] 187 / 1e-62 AT4G40030 229 / 3e-79 Histone superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF00125 [poplar] [flax] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Potri.001G016700.2 pacid=42790751 polypeptide=Potri.001G016700.2.p locus=Potri.001G016700 ID=Potri.001G016700.2.v4.1 annot-version=v4.1 ATGGCCCGCACAAAGCAGACAGCAAGAAAATCCACCGGGGGGAAAGCCCCAAGGAAACAGCTAGCGACCAAGGCTGCCAGGAAGTCAGCTCCAGCCACCG GAGGAGTGAAGAAGCCCCACCGATTCAGGCCAGGAACGGTGGCCTTGAGAGAAATAAGGAAGTACCAGAAGAGCACAGAGCTGTTGATAAGAAAGCTACC ATTTCAGAGGCTGGTGAGAGAAATAGCCCAAGATTTCAAGACAGACTTGAGGTTCCAAAGCAGCGCAGTAGCAGCACTTCAAGAGGCAGCAGAGGCATAC CTTGTTGGGTTGTTTGAGGACACCAACTTGTGTGCTATTCATGCTAAGAGGGTCACTATCATGCCTAAAGATATTCAGCTCGCCCGTAGAATTAGAGGGG AGAGAGCTTAA
AA sequence Show only first row Show all	>Potri.001G016700.2 pacid=42790751 polypeptide=Potri.001G016700.2.p locus=Potri.001G016700 ID=Potri.001G016700.2.v4.1 annot-version=v4.1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAY LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65360			Histone superfamily protein (....		Potri.001G016700 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Potri.014G096900 [exp]	3.00	0.9231	HTR906
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.005G026500 [exp]	4.00	0.9222	HTA914
AT5G59970			Histone superfamily protein (....		Potri.007G012500 [exp]	5.38	0.8439
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.004G031300 [exp]	6.24	0.9103
AT5G59970			Histone superfamily protein (....		Potri.006G168100 [exp]	6.63	0.9102
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.013G018200 [exp]	6.70	0.9055
AT5G65360			Histone superfamily protein (....		Potri.001G016900 [exp]	11.48	0.8675
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	13.41	0.8778
					Potri.011G063600 [exp]	18.57	0.8590
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	28.00	0.8735	PRL.2

Compare expression of checked genes

Potri.001G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.