Plant FIBer expression Database

Potri.001G016800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12920 503 / 2e-175 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G052800
[exp]
46 / 3e-05 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031253
[exp]
436 / 2e-150 AT5G12920 375 / 2e-125 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Lus10031823
[exp]
404 / 4e-138 AT5G12920 346 / 5e-115 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.001G016800.3 pacid=42789786 polypeptide=Potri.001G016800.3.p locus=Potri.001G016800 ID=Potri.001G016800.3.v4.1 annot-version=v4.1
ATGGAGAAGTATTTGGTTCCAGCAGAAGAAAACCCTAGAAGACCTACTCGATTGTATCAATGGAAGAGAAGTTTAATCGAATTGAATGGCAGATTAGAGT
CAAAGTACCGCCATGACCTCTCTGCTCTGCTCTTGCAATCCTACTCTCAGATTGGAGCTTTTCCGCACTTGTATCATACAATTGGAGGTGGAGATGCAGC
AATTCCTTGTCAAACTAATTTGAATTCGAGGGGTTTGGCCTCTGACTCGACTCGCCAATTCGCTATAAACAAGCAAGGCGTATCTGCCCTGGAGTTTGAC
AATAAGGGAATTTATTTAGTATCAGTGACGAAATCAGGGTGCTTGACAGTGCATGACTTTGAATCACTTTATTGTCAGGCTAATGATTCATTTCCATGCT
TTGGCAAAGATGAAAGAAAGTGTGAAGATGAAAGTAAACATGTCTTGCACAATTCTTTGGGCCGACAACTAGACTCGGTTCGCTGGAATCTTGCCAACCA
AGATGAGGTCGCTTGCACATCTATGAAAACTAATGAAGTACAAATTTTTGATATTGGTTACATTTCTTCTGAACCAGTTGAAGTTTTAAAAACAAGGCGT
GCTGTCACTGTTCATGGGTCTGACATTCATAAAGGTCTAACAGATATTGCTTTCACTTCAGAATCAAGGTTAATTGCTTCTGATACAAATGGTGGAGTCA
ATGTATGGGATAGAAGAATGAGTGCACTTCCATGTCTTGAGCTTACATCTAATTCCCGTAGTACCCTTAACAGTATCAAGTTAAATGTGGAAAATCAGAT
GGTTTTCGGGGCTGGTCGGCATGGAATAGTTTATATGTGGGATCTCCGTGGAGGAAGAGCTCCTTCTGCTTTTCAAATTCATAAAGAGATGTGCCATCCA
CCTGTAACGTCTTGGAAGTTATCATCAATGCTTGAGAGAATAGGATCTTTGAAGGCACAATCAGATATTGTCTCCAAAGAAGTGCACTCCATTGATTTTG
ATCCATCTTGCCCGTATCAGTTGGCATTCCATCTTGATGATGGTTGGTCGGGCATTTTAGATATTTACAATTTCCAAGTTACGCATGTTCATTGCCCTCC
CCCAGCTTGGTTGAATGGGTCCTTCACTGATCTGTTGTCCTTGAGAAAACCATCATGGCTAGCGACACATTCAATCTATGTGGTTGGATCATCAACTGAC
AATGGCATCCATCTTTTAGATTTCTATCCTGATCCCAGCTCTCCTTGCCACGTGGACTACAGTCCCATTGAGGACGCAGAGAGGCCATCCAGGGTGAACA
GAAGAAACAAGCAAAATAGGTTTATTCCATTGTCTGAAGGTGTTACTGCGTGCGCCGCCCATCCCCTCAACGGCACCATCATAGCTGGAACCCAGCTTTC
ATCTTTGCTGGTTGTATCCCAACAGAAGCATTCTGAAGTCGATTAG
AA sequence
>Potri.001G016800.3 pacid=42789786 polypeptide=Potri.001G016800.3.p locus=Potri.001G016800 ID=Potri.001G016800.3.v4.1 annot-version=v4.1
MEKYLVPAEENPRRPTRLYQWKRSLIELNGRLESKYRHDLSALLLQSYSQIGAFPHLYHTIGGGDAAIPCQTNLNSRGLASDSTRQFAINKQGVSALEFD
NKGIYLVSVTKSGCLTVHDFESLYCQANDSFPCFGKDERKCEDESKHVLHNSLGRQLDSVRWNLANQDEVACTSMKTNEVQIFDIGYISSEPVEVLKTRR
AVTVHGSDIHKGLTDIAFTSESRLIASDTNGGVNVWDRRMSALPCLELTSNSRSTLNSIKLNVENQMVFGAGRHGIVYMWDLRGGRAPSAFQIHKEMCHP
PVTSWKLSSMLERIGSLKAQSDIVSKEVHSIDFDPSCPYQLAFHLDDGWSGILDIYNFQVTHVHCPPPAWLNGSFTDLLSLRKPSWLATHSIYVVGSSTD
NGIHLLDFYPDPSSPCHVDYSPIEDAERPSRVNRRNKQNRFIPLSEGVTACAAHPLNGTIIAGTQLSSLLVVSQQKHSEVD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12920 Transducin/WD40 repeat-like su... Potri.001G016800
[exp]
0 1
AT3G17380 TRAF-like family protein (.1) Potri.017G049100
[exp]
2.82 0.9124
AT4G16970 Protein kinase superfamily pro... Potri.003G082600
[exp]
3.87 0.8806
AT3G12210 DNA binding (.1.2) Potri.002G114400
[exp]
6.00 0.8989
AT4G39630 unknown protein Potri.005G082500
[exp]
7.93 0.8865
AT3G54230 SUA suppressor of abi3-5 (.1.2) Potri.017G138401
[exp]
10.95 0.8990
AT3G14470 NB-ARC domain-containing disea... Potri.012G121725
[exp]
10.95 0.8906
AT5G43670 Sec23/Sec24 protein transport ... Potri.008G161300
[exp]
14.83 0.8842
AT3G05480 ATRAD9 cell cycle checkpoint control ... Potri.013G017500
[exp]
17.17 0.8463
AT1G66680 AR401 S-adenosyl-L-methionine-depend... Potri.012G068600
[exp]
17.43 0.8884
AT3G14470 NB-ARC domain-containing disea... Potri.003G025904
[exp]
19.07 0.8665

Potri.001G016800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.