Plant FIBer expression Database

Potri.001G017000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12070 542 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G207600
[exp]
761 / 0 AT4G12070 546 / 0.0 unknown protein
Potri.018G050100
[exp]
102 / 1e-22 AT4G12070 133 / 6e-33 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031257
[exp]
580 / 0 AT4G12070 548 / 0.0 unknown protein
Lus10031828
[exp]
441 / 7e-151 AT4G12070 416 / 7e-142 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G017000.2 pacid=42787671 polypeptide=Potri.001G017000.2.p locus=Potri.001G017000 ID=Potri.001G017000.2.v4.1 annot-version=v4.1
ATGACCATGGACAGAAACTCACGACCAGAAAAACCAGGAAGAGACTCAAATTCAGTTATCGTTCTCTCAGTGGAATGTCTAAAAGGGAGTTCAACAGCTG
ACGAATGGACAGGAGACATGCTTCAAACAGGAGATATAGTTGAAGAAATTCTGATCGGATCCGGGTCATCATTATCCGGATCCAGGTCTATAAGATATAA
AGCTCCGTTCAAGAACGGAAAAAGTGGGGTTCAAAAGATACTTCATAAATCGTTCAAAAACAAAGAGACTTCCATTGTTGTTCGAGTTAGACGTGGTAGA
GATGAGTTTGCTGAGTTGCATGCCTGTGTTGTGCCCGAGTCGGGTTACAAAAATAAATATGTTTTGAGGTCTATTGAGGATCCGAATTACGCTGTCGGGT
TCACGGATCGGTCTGAAGCTGAATGCTTTGAGCTACAAGCTTCAAGAAGCTCCAGAATTGTTAGTGCATTACAGAGGGCTAAGCTTCAAGATGGGTATGT
GGCTTATCCGTGGGAAAAGAAGATGCAGGAGTACTTGTTAATTCCCACCTCTAGCAGCTTTCTTTCTTTACTCCTCCTTCCAAAAGCTTCAGACCGAGTT
GCTTCTCGATACAATGACTTGGAGGACACTCTTGCCAGGGCAAATGCGTGGCTGTATGCATCTCAGGCTTCTGGAGTTCCAATTGTTTTCATGAATATTC
AGACCGAATCCTTGCTTACCAAGATATCAGGAGAGACTGCTTCCTCGACTGTGAATGCTGGTTCATTTTCCGATTTGTCTAGGCTTGCACATGTAAGCTT
GTATGGTTTTGAGGATTACCATGGGGTTGATCTCGGTGTAGTCAGAGCAGTTCGTCTTTGGTATGCACCTTTATGTGGAGAATTTGCAATTGAGGTCAAA
ATAAAAGAAGATGATACTAAGCTTGGATTTGCCATCAGCCGCACAGAAGAGGGCTTTATCTACGTCTCATCAGTTATGGACGATGATGACAATGTACCAT
CGACAAGGTCAGGGCTTAGCAATCTATACAAAGAAGCAACAAGCTCATCGAGACTGCTGGTTGTTTCAAGATTATCAAACCAGAAGGTCCTTCCTTGGAT
GGTTTCGTCGACAGGAGCAGTCAAATGTTTTGACACGGTATCACTAAGCCAGAAACTTTCCTTACATCGCCATGCCAAGGTGCCTATTCTCATTCATGTT
CTCTTGTGGGACGGAACATTGCCTTCACCGCCAAGTGCAGGCAGTACTGGTAGGTTTAGGTCCGTGTCCCCTCCTGTTATGGCATTGCCACCTGAAATTC
AATTGGCACGCCAGCCTAGTCAGAATCAAATACAGCCCCTGCCAGCAGCTGATATTCCGAATGATGCAGTCGTGGGGAGCGAGGCAGATATTAGGCTTGA
TCGAGACACTGCCGGAGAAACATCTTTCCGGTTCGATTATTTTTCACTTCCAAACAACTGGAGCACGCGGATAGTGATCCTCGTCAGACTTCTCCAAACA
TTACCCACCGTCGACTCCTTTAAAATCCACCGTCCAAACCCTCTCCCCAAAGAGGGAAGGAGCTCAAAGTTTCAAAAGAGCCCGCCTACTAGAATCAATC
CTATTGGTCACTTTACAGCGCACCCGGATCTCCATTTCCACCGTTCATAA
AA sequence
>Potri.001G017000.2 pacid=42787671 polypeptide=Potri.001G017000.2.p locus=Potri.001G017000 ID=Potri.001G017000.2.v4.1 annot-version=v4.1
MTMDRNSRPEKPGRDSNSVIVLSVECLKGSSTADEWTGDMLQTGDIVEEILIGSGSSLSGSRSIRYKAPFKNGKSGVQKILHKSFKNKETSIVVRVRRGR
DEFAELHACVVPESGYKNKYVLRSIEDPNYAVGFTDRSEAECFELQASRSSRIVSALQRAKLQDGYVAYPWEKKMQEYLLIPTSSSFLSLLLLPKASDRV
ASRYNDLEDTLARANAWLYASQASGVPIVFMNIQTESLLTKISGETASSTVNAGSFSDLSRLAHVSLYGFEDYHGVDLGVVRAVRLWYAPLCGEFAIEVK
IKEDDTKLGFAISRTEEGFIYVSSVMDDDDNVPSTRSGLSNLYKEATSSSRLLVVSRLSNQKVLPWMVSSTGAVKCFDTVSLSQKLSLHRHAKVPILIHV
LLWDGTLPSPPSAGSTGRFRSVSPPVMALPPEIQLARQPSQNQIQPLPAADIPNDAVVGSEADIRLDRDTAGETSFRFDYFSLPNNWSTRIVILVRLLQT
LPTVDSFKIHRPNPLPKEGRSSKFQKSPPTRINPIGHFTAHPDLHFHRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12070 unknown protein Potri.001G017000
[exp]
0 1
AT1G50420 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) Potri.009G048700
[exp]
1.41 0.8322 Pt-SCL3.1
AT1G24100 UGT74B1 UDP-glucosyl transferase 74B1 ... Potri.015G071900
[exp]
4.58 0.6865
AT2G46680 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX ... Potri.002G176300
[exp]
5.65 0.7586 Pt-ATHB.4
AT2G41290 SSL2 strictosidine synthase-like 2 ... Potri.006G040900
[exp]
7.48 0.7221
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Potri.014G041600
[exp]
8.94 0.6537 Pt-BES1.1
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.013G014400
[exp]
9.48 0.7112
AT5G49120 Protein of unknown function (D... Potri.010G011700
[exp]
9.48 0.7449
AT2G45400 BEN1 NAD(P)-binding Rossmann-fold s... Potri.002G148000
[exp]
11.22 0.6679
AT4G22990 Major Facilitator Superfamily ... Potri.003G120600
[exp]
18.46 0.6392
AT1G27300 unknown protein Potri.003G170700
[exp]
18.70 0.6788

Potri.001G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.