Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51140 237 / 8e-75 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G42280 215 / 2e-66 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 141 / 2e-39 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 138 / 3e-38 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05805 133 / 2e-35 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 132 / 2e-35 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 81 / 6e-17 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G34530 81 / 7e-17 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT4G30980 80 / 1e-16 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT1G68920 81 / 2e-16 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207200 [exp] 606 / 0 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 246 / 1e-77 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 220 / 6e-69 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G050500 [exp] 220 / 2e-68 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 216 / 3e-66 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.014G150600 [exp] 148 / 3e-41 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 145 / 1e-40 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 140 / 7e-39 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 141 / 2e-38 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031826 [exp] 262 / 8e-85 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10031255 [exp] 194 / 1e-60 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10015704 [exp] 191 / 5e-57 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 190 / 2e-56 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021023 [exp] 164 / 2e-45 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10025518 [exp] 152 / 1e-42 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026733 [exp] 131 / 7e-37 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10023829 [exp] 126 / 2e-32 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 82 / 4e-17 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10006587 [exp] 81 / 2e-16 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G017300.9 pacid=42789273 polypeptide=Potri.001G017300.9.p locus=Potri.001G017300 ID=Potri.001G017300.9.v4.1 annot-version=v4.1 ATGGAGCACCAGCATCATTTTCTTCATGGTCATAATGAACACCAACAAATTCATCAGAAACAAATGAACCCTGGGTTAACAAGGTATCAATCCGCACCGA GTTCATATTTATCAAATATTTTGGACAGAGACTTCTGTGAAGAGTTTCTCAATAGGCCGGCAAGTCCGGAAACAGAACGAATTCTCGCGAGATTTTTAGC CAGTTCTAGTGGTAATACAGAGAATATATCAAGTCAAAATCTTTGTGAGATCAAGCAAGATTCTCCAGAAGCAGTTTCACAAACTAATCAGCAACCCCAG ATGGTGGCTGCAATGAATAATCTTGGCAGTGACACAAGACTGCAGCAGCAGAGCAATTACTCTGCCTCACAGGGTTTTTATCAAAATCAATCAAAACCTC CATTACCAGATCAGAAGCCAGGTTCTGGAATGAATTATAGATCAATGAATTCAATGGGAATGGAGAGGTTGCCTTCCATGAAGACTAGTAGTAGCAATAA CTCGAATCTAGTTCGACATAGTAGCTCACCTGCAGGGCTTTTCTCCAACATAAATAGTGAATTTGAAAATGGCTATGCTGTCTTGAGAGGTATGGGAGAT CTTGGAGCAGGTAATAGAGACACAAACTATTCTGCAGCCAGCAGGCCACCTCCTTCTTCAGGGAGAATGGGTCCAGTTGCTGAAATGGGAAACAAAAACA TGGGAGAAAATAGCCCAGAGAGTGGTAGTTATAGTGAAACTCGCAGCAGTAATTATGTCTCAGGTTACCCTATTGGATCTTGGGATGATTCTGAAACTCA GAATGAAGAGGGAGGAAATCGCCCTCCGATGTTGGTTCATCACATGAGTTTGCCAAAAACCGCAGCAGAAATTTCAGCCATCGAGAAGTTCTTGCAATTT CAAGATTCCGTGCCTTGCAGGACTAGAGCTAAGCGTGGTTGTGCTACTCATCCAAGAAGCATTGCTGAGAGGGTGAGAAGAACTAGAATCAGTGAACGAA TGAGGAAACTCCAGGATCTTGTACCTAACATGGATAAGCAAACAAACACATCAGACATGCTCGATTTGGCTGTTGACTACATCAAGGACCTTCAAAGACA AGTCCAGACACTTTCAGAGATTCGTGCAAGGTGTGCATGCATAAACAAGCAGCAGCAGCAGCCCTAG
AA sequence Show only first row Show all	>Potri.001G017300.9 pacid=42789273 polypeptide=Potri.001G017300.9.p locus=Potri.001G017300 ID=Potri.001G017300.9.v4.1 annot-version=v4.1 MEHQHHFLHGHNEHQQIHQKQMNPGLTRYQSAPSSYLSNILDRDFCEEFLNRPASPETERILARFLASSSGNTENISSQNLCEIKQDSPEAVSQTNQQPQ MVAAMNNLGSDTRLQQQSNYSASQGFYQNQSKPPLPDQKPGSGMNYRSMNSMGMERLPSMKTSSSNNSNLVRHSSSPAGLFSNINSEFENGYAVLRGMGD LGAGNRDTNYSAASRPPPSSGRMGPVAEMGNKNMGENSPESGSYSETRSSNYVSGYPIGSWDDSETQNEEGGNRPPMLVHHMSLPKTAAEISAIEKFLQF QDSVPCRTRAKRGCATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDLQRQVQTLSEIRARCACINKQQQQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Potri.001G017300 [exp]	0	1
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	2.82	0.8738
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Potri.004G166600 [exp]	4.89	0.9079
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.007G087401 [exp]	8.06	0.8606
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.009G032000 [exp]	8.94	0.8355
AT2G20740			Tetraspanin family protein (.1...		Potri.011G050900 [exp]	11.22	0.8716
AT3G07650	CO	COL9	CONSTANS-like 9 (.1.2.3.4)		Potri.014G170600 [exp]	11.48	0.8684	Pt-COL11.2
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	18.65	0.8168
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Potri.011G142501 [exp]	21.21	0.8064
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.001G090800 [exp]	21.35	0.8533
AT1G04880	ARID		HMG (high mobility group) box ...		Potri.017G055200 [exp]	24.16	0.8477

Compare expression of checked genes

Potri.001G017300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.