Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 229 / 4e-68 unknown protein AT2G28580 192 / 2e-55 Plant protein of unknown function (DUF247) (.1) AT2G44930 185 / 6e-53 Plant protein of unknown function (DUF247) (.1) AT5G11290 173 / 5e-50 Plant protein of unknown function (DUF247) (.1) AT3G50120 176 / 2e-49 Plant protein of unknown function (DUF247) (.1) AT3G50160 171 / 1e-47 Plant protein of unknown function (DUF247) (.1) AT3G50170 166 / 1e-45 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 163 / 5e-45 Plant protein of unknown function (DUF247) (.1) AT3G50140 158 / 5e-43 Plant protein of unknown function (DUF247) (.1) AT5G22540 150 / 1e-40 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017900 [exp] 481 / 8e-169 AT4G31980 274 / 4e-85 unknown protein Potri.003G209100 [exp] 472 / 2e-165 AT4G31980 255 / 7e-78 unknown protein Potri.003G206801 [exp] 446 / 4e-155 AT4G31980 261 / 3e-80 unknown protein Potri.T012600 [exp] 444 / 3e-154 AT4G31980 254 / 1e-77 unknown protein Potri.003G208001 [exp] 435 / 3e-151 AT4G31980 229 / 1e-68 unknown protein Potri.003G208300 [exp] 422 / 2e-146 AT4G31980 264 / 6e-82 unknown protein Potri.003G209500 [exp] 404 / 4e-139 AT4G31980 240 / 7e-73 unknown protein Potri.003G206601 [exp] 403 / 3e-138 AT4G31980 301 / 3e-95 unknown protein Potri.003G206501 [exp] 403 / 9e-138 AT4G31980 308 / 1e-97 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039777 [exp] 188 / 6e-55 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 184 / 2e-53 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 182 / 3e-52 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 182 / 3e-52 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 176 / 6e-50 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 173 / 3e-49 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 164 / 1e-45 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 164 / 1e-45 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 163 / 1e-44 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 160 / 7e-44 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G017600.7 pacid=42788817 polypeptide=Potri.001G017600.7.p locus=Potri.001G017600 ID=Potri.001G017600.7.v4.1 annot-version=v4.1 ATGGAGATTGTTGGAACATCAACTGAGCAGATGAAAAGGAATGATCACGTTTCGCTTGACATTGACAAATTAACAGCGTCTGTGCAAGAGGAGTTGAAAA CCTTGCATGCCTTCTCTAATACGTGTTCCATCTACAGAGTTCCTAAAAGACTACGCGACTCGAAGGAATATGCCTACACGCCTCAACTAGTCTCCATTGG GCCCATTCACCATGGAAAAGAAGAGCTGAAAGAAATGGAAGAGCATAAAAAAATATACCTGCAAGAGTTTCTTAAACTGAGTGAGGTAAGTGTTAAGGAA TGTATCGCAGCTGTTGCAGAGAAGGAGACAAGTTTGCGCAACTGTTATGCAGATAATTTTGAAAATATTAGTACAGAGGACTTTGTGAAAATGATGTTGC TAGACAGCTCCTTCATCATTATGGTCTTCCTGATACAGTTTGGCTCTTTCATCCCAAGCAACTATGACCGTATATTCGGTAAACCGTGGATGATAAGAGG AATCGATTTTGACATGTGCTTGCTTGAAAATCAGATTCCATTCTTCATTCTTGACGACTTGCTTAAGCTTTCCAGAAGACAGGGCGGATGTTCCATGATT AAGCTTACTCGTGATTTCTTATCAAGCACATTTGGGGATTCATGGGTGCCAAAGGACATTTTGGAGCAAATCAATTCCTCTGAAGTAGAGCATTTTGTTG ACTTTCTAAGAAAGTGTCAGCGGCCAGCAAAGCGGACACAGCAACAGCCTCTTGAAAGTCGAACCACACCAAGTGTAATGGAGCTCCATCAATCTGGAGT CAAGTTTAAGTTGGGGTCCAAGGAAAAAATATTTGACATGAACTTTGATTTTCATAAAGGGATACTGGAAATACCACCACTATTTTTAGAGGATGAAACA GAGAAGTTATTTAGAAATCTCCACGCCTTTGAGCAATGCCATTGCAGAGATGTATACGTAAGTGACTATATCGCTACCATCAATTTCCTTGTTCGTGATA CTAATGATGTAGAAATACTAGCTAAGAAAGGAATTATAGATTATTGGCTCAGTGATAATGATGCAGTTATGAGTGTTCTCCATGATCTTGATAGAGGAAA TCTTGTTAACAGTAAACAATTTTATTTTGCTGATGTCGTTGAAGATCTGAATAAGTACTGCAGAAAGCGGACGCACAAATGGATTGCAGCCCTGAAACAC AATTATTTCCATAATCCATGGGTTTCCATCTCTGTTGTTGCAGCTGGGGCTCTTCTAATACTCACGGTCATACAAACAGTGTGTTCTGTCTTTCAAGTGA AATAG
AA sequence Show only first row Show all	>Potri.001G017600.7 pacid=42788817 polypeptide=Potri.001G017600.7.p locus=Potri.001G017600 ID=Potri.001G017600.7.v4.1 annot-version=v4.1 MEIVGTSTEQMKRNDHVSLDIDKLTASVQEELKTLHAFSNTCSIYRVPKRLRDSKEYAYTPQLVSIGPIHHGKEELKEMEEHKKIYLQEFLKLSEVSVKE CIAAVAEKETSLRNCYADNFENISTEDFVKMMLLDSSFIIMVFLIQFGSFIPSNYDRIFGKPWMIRGIDFDMCLLENQIPFFILDDLLKLSRRQGGCSMI KLTRDFLSSTFGDSWVPKDILEQINSSEVEHFVDFLRKCQRPAKRTQQQPLESRTTPSVMELHQSGVKFKLGSKEKIFDMNFDFHKGILEIPPLFLEDET EKLFRNLHAFEQCHCRDVYVSDYIATINFLVRDTNDVEILAKKGIIDYWLSDNDAVMSVLHDLDRGNLVNSKQFYFADVVEDLNKYCRKRTHKWIAALKH NYFHNPWVSISVVAAGALLILTVIQTVCSVFQVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.001G017600 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	11.74	0.9167
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	23.62	0.8879
AT5G13090			unknown protein		Potri.012G101200 [exp]	30.41	0.8425
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G141700 [exp]	34.78	0.8933	Pt-ZOG1.2
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	36.23	0.8923
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	36.46	0.8968
AT3G50160			Plant protein of unknown funct...		Potri.016G039100 [exp]	36.72	0.8878
AT4G02550			unknown protein		Potri.010G215600 [exp]	42.84	0.8818
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048500 [exp]	46.58	0.8801
AT5G52960			unknown protein		Potri.016G123100 [exp]	49.89	0.8938

Compare expression of checked genes

Potri.001G017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.