Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 275 / 3e-85 unknown protein AT3G50150 212 / 3e-63 Plant protein of unknown function (DUF247) (.1) AT3G50120 201 / 1e-58 Plant protein of unknown function (DUF247) (.1) AT5G11290 195 / 2e-58 Plant protein of unknown function (DUF247) (.1) AT2G44930 199 / 4e-58 Plant protein of unknown function (DUF247) (.1) AT3G50140 198 / 2e-57 Plant protein of unknown function (DUF247) (.1) AT3G50160 197 / 2e-57 Plant protein of unknown function (DUF247) (.1) AT3G50170 196 / 9e-57 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT2G28580 192 / 3e-55 Plant protein of unknown function (DUF247) (.1) AT3G50130 189 / 6e-54 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G209100 [exp] 541 / 0 AT4G31980 255 / 7e-78 unknown protein Potri.001G017600 [exp] 515 / 0 AT4G31980 229 / 3e-68 unknown protein Potri.003G206801 [exp] 508 / 3e-179 AT4G31980 261 / 3e-80 unknown protein Potri.003G208001 [exp] 506 / 4e-179 AT4G31980 229 / 1e-68 unknown protein Potri.T012600 [exp] 494 / 1e-173 AT4G31980 254 / 1e-77 unknown protein Potri.003G208300 [exp] 468 / 3e-164 AT4G31980 264 / 6e-82 unknown protein Potri.003G206501 [exp] 456 / 2e-158 AT4G31980 308 / 1e-97 unknown protein Potri.003G209500 [exp] 437 / 4e-152 AT4G31980 240 / 7e-73 unknown protein Potri.003G206601 [exp] 428 / 9e-148 AT4G31980 301 / 3e-95 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 219 / 1e-66 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 216 / 2e-65 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 212 / 2e-63 AT4G31980 251 / 5e-76 unknown protein Lus10009871 [exp] 207 / 9e-62 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 201 / 7e-59 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 198 / 3e-58 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 196 / 1e-57 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 188 / 3e-54 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 176 / 6e-50 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 173 / 6e-49 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.001G017900.3 pacid=42793670 polypeptide=Potri.001G017900.3.p locus=Potri.001G017900 ID=Potri.001G017900.3.v4.1 annot-version=v4.1 ATGAGAGATCACTCAATGAGACACAGGACGGAGATTGCTGGAACATCAACTGATCAGCTGATGAACAAGGGAGATCATGGTTCGGTTAACACTAACAAGT TAGCAACGTCCATGCAAGAGGAGTTCAATAAATTGCGTCCTTTCTCCGATGAGTGTTCAATCTACAGGGTTCCTAAAAGACTACTCAAGTTAAATAGACG AGCTTATACACCTCAAGTAGTCTCCATCGGCCCACTTCACCATGGAAAAAAAGAGCTACAAGAAATGGAAGAGCATAAGAAAATGTACCTTCAAGATTTT CTTAAATTCAGCGAGGTAAGCCTTGAGGATTTTATTGCATTTATTGCAGAGAAGGAAACTAGATTGCGAAACTGTTATGCGGCAACCTTTGAAAAGCTTA GCAGTGAAAAATTTGTGAAAATGATGCTTCTCGATTGCGCCTTCGTCATTATGGTCTTACTGAGGGCTTGGTACGGAAATAATGGATGCAGAAATGACCG TATATTCGGTAAACCTTGGATGATCAGTGATGTATCCAGGGACATGTGCTTGCTTGAAAATCAGCTTCCATTCTTCATTCTAGAAGACTTGAATAAGCTA TCCAAAATAAGGTGCCCTATTTCCTTGAAGGAGCTCACCTTTGTATTCTTAACAAACAGATGGTCTTCATGGGTGCCCCAGGACAATTTGGAGAAAATCA AATTCTGTGAAGCAGAGCATTTTGTTGCTTTTCTGAGAATCTGTCAGCAGCCAACAGAGCAAAAACAGCAAAAGAAAATTGATACTCTAAGCACACCCAG TGCAATGGATCTCCATCAGGCTGGAGTCAGGTTTAAGTTGGGGTCCAGCAAGAAACTACTAGACATAAAATTCGACGCTGATAAAGGGACACTGGAAATT CCATGTTTAAAGATTGTGGATGACACAGAAACGTTATTCAGGAATGTCCAAGCCTTTGAGCAATGCCATTCCGATTCTGGTTTTATAGGTAACTATATCA CGATGATCAATCTGGTTGTCCAAGCTTCCAAGGACACAGAAATACTCGCAAGAAAAGGAATTACAGAGAATTGGCTACGTGATAACGATGCCCTCTTAAG TCTTCTCCACAATCTTTCCAAAGAAAATATTGTCGATAGGCACGATTTCTATTTTTCTGATGTCGTTGAACATCTGAACAAGTATTACTCAAGGCGTAGG CACAAATGGAAGGCAGCTCTGAAACAGAAGTATTTCGACAATCCGTGGACCATAATCTCTGTTATTGCAGCTGGAATTCTCCTCCTACTTACTGTCATAC AAGCAGTGTGTTCTATCATTCAAGTTGTTTAG
AA sequence Show only first row Show all	>Potri.001G017900.3 pacid=42793670 polypeptide=Potri.001G017900.3.p locus=Potri.001G017900 ID=Potri.001G017900.3.v4.1 annot-version=v4.1 MRDHSMRHRTEIAGTSTDQLMNKGDHGSVNTNKLATSMQEEFNKLRPFSDECSIYRVPKRLLKLNRRAYTPQVVSIGPLHHGKKELQEMEEHKKMYLQDF LKFSEVSLEDFIAFIAEKETRLRNCYAATFEKLSSEKFVKMMLLDCAFVIMVLLRAWYGNNGCRNDRIFGKPWMISDVSRDMCLLENQLPFFILEDLNKL SKIRCPISLKELTFVFLTNRWSSWVPQDNLEKIKFCEAEHFVAFLRICQQPTEQKQQKKIDTLSTPSAMDLHQAGVRFKLGSSKKLLDIKFDADKGTLEI PCLKIVDDTETLFRNVQAFEQCHSDSGFIGNYITMINLVVQASKDTEILARKGITENWLRDNDALLSLLHNLSKENIVDRHDFYFSDVVEHLNKYYSRRR HKWKAALKQKYFDNPWTIISVIAAGILLLLTVIQAVCSIIQVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.001G017900 [exp]	0	1
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.003G130000 [exp]	1.00	0.8981
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	17.49	0.8388
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	19.23	0.8641
					Potri.005G097250 [exp]	21.79	0.7560
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	23.15	0.8534
AT5G17680			disease resistance protein (TI...		Potri.019G069200 [exp]	29.73	0.8216
					Potri.011G134500 [exp]	34.64	0.8039
AT5G16640			Pentatricopeptide repeat (PPR)...		Potri.005G097200 [exp]	38.15	0.7759
AT5G04000			unknown protein		Potri.016G044001 [exp]	39.87	0.8241
AT4G40045			unknown protein		Potri.008G025700 [exp]	40.98	0.8218

Compare expression of checked genes

Potri.001G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.